View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_high_6 (Length: 434)
Name: NF18219_high_6
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 54 - 423
Target Start/End: Original strand, 52590315 - 52590684
Alignment:
| Q |
54 |
gtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctc |
153 |
Q |
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| T |
52590315 |
gtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctc |
52590414 |
T |
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| Q |
154 |
cacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttacca |
253 |
Q |
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| T |
52590415 |
cacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttacca |
52590514 |
T |
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| Q |
254 |
tgcaattttccatttccacaatctatcacannnnnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaataatctgtacat |
353 |
Q |
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| T |
52590515 |
tgcaattttccatttccacaatctatcacatttttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaataatttgtacat |
52590614 |
T |
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| Q |
354 |
tgtctcgtgactcttcttccaatttataattaccttggagtgtatttccagatgaaaaattgcagttcat |
423 |
Q |
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| T |
52590615 |
tgtcttgtgactcttcttccaatttattattaccttggagtgtatttccagatgaaaaattgcagttcat |
52590684 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
89 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
134 |
Q |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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