View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_high_7 (Length: 410)
Name: NF18219_high_7
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 7597915 - 7597536
Alignment:
| Q |
15 |
atgaatggaaaggccttcaaaatgattgggttcatatcctttaggtgaatagatgcgagttttgttaattgacaaaagtgtgaatttttt-ctgagatgg |
113 |
Q |
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| T |
7597915 |
atgaacggaaaggccttcaaaatgattgggttcatatcctttaggtgaatagatgtgagttttgttaattgacaaaggtgtgaatttttttctgagatgg |
7597816 |
T |
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| Q |
114 |
taaagtctttacttaaaaacatttacactatgttcacctttaccatctccatattcatatttagaagaatatttttattaaagagtgtgaatttatatag |
213 |
Q |
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| T |
7597815 |
taaagtctttacttaaaaacatttacactatgttcacctttaccatctccatatccatatttaggagaatatttttattaaagagtgtgaatttatatag |
7597716 |
T |
|
| Q |
214 |
ccgtgctagacaaaaataactttgtatggccgtacgaggttgcatctaaagcacgtgcactgtagattgcacgtgatatattccctgttacgannnnnnn |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7597715 |
ccgtgctagacaaaaataactttgtatggccgtacgaggttgcatctaaagcacgtgcactgtagattgcacgtgatatattccctgttacgattttttt |
7597616 |
T |
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| Q |
314 |
nctttaactactatgactttcacaccggtatgtcccgtggcaataggagaagcccttggtttatatcaccctatgcagtg |
393 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7597615 |
tctttaactactatgactttcacaccggtatgtgccgtggcaataggagaagcccttggtttatatcaccctatgcagtg |
7597536 |
T |
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