View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_1 (Length: 722)
Name: NF18219_low_1
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 647; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 19 - 715
Target Start/End: Original strand, 36284095 - 36284790
Alignment:
| Q |
19 |
cttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcaagacaat-atagatgttttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
36284095 |
cttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcatgacaattatagatgttttg |
36284194 |
T |
|
| Q |
118 |
tgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctgtctttcatcacaccttactactttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284195 |
tgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctgtctttcatcacaccttactactttc |
36284294 |
T |
|
| Q |
218 |
atattcagagattatgaaggcacggatgaagagttcgaacttataaggtacattttgaagagcggaaaagtgcttaagaggaccacaatttatttcggaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
36284295 |
atattcagagattatgaaggcacggatgaagagtttgaacttataaggtacattttgaagagtggaaaagtgcttgagaggaccacaatttatttcggaa |
36284394 |
T |
|
| Q |
318 |
gtagctgggaaccaagcgaggcaagagatgctgtgtcggaattatgttccttgccaaaagcctcaaaagataacaggattatgtgcttcgaagttgcctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284395 |
gtagctgggaaccaagcgaggcaagagatgctgtgtcggaattatgttccttgccaaaagcctcaaaagataacaggattatgtgcttcgaagttgcctt |
36284494 |
T |
|
| Q |
418 |
gatggtatggattactaccttatctatttttagacacttaacgagtttaagcttgtgtagatttaatgtgtgtgtatgaatttagttctatttttatcca |
517 |
Q |
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| T |
36284495 |
gatggtatggattacttccttatctatttttagacacttaacgagtttaagcttgtgtagatttaa--tgtgtgtatgaatttagttctatttttatcca |
36284592 |
T |
|
| Q |
518 |
ttcggatatggatgtcctaagatttctagatgtcgcacgcttatgaattgttgtaaaattgcattggggacaacaaaataatgtgtcttgttgtctcttt |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
36284593 |
ttcggatatggatgtcctaagatttctagatgtcgcacgcttatgaattgttgtaaaattgcattagggacaacaaaataacgtgtcttgttgtctcttt |
36284692 |
T |
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| Q |
618 |
atggcgcaactccttcaatgttattgattttttatgattctataatctatatgttaattttcattgttttgaattaggtgaatttctgttgatgatgt |
715 |
Q |
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| T |
36284693 |
atggcgcgactccttcaatgttattgattttttatgattctataatctatatgttaattttcattgttttgaattaggtgaatttctgttgatgatgt |
36284790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 105 - 395
Target Start/End: Original strand, 34555046 - 34555339
Alignment:
| Q |
105 |
tatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctgtctttcatcaca |
204 |
Q |
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||||| ||| |||||| ||| ||||||||||||||| ||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34555046 |
tatagttgtgttgtgacctcacttgacaggttgatgaactatgtgataatgaaattgaatggagacaaccaacaatagttcctagctgtctttcatcaca |
34555145 |
T |
|
| Q |
205 |
ccttactactttcatattcagagattatgaaggcacggatgaagagttcgaacttataaggtacattttgaagagcggaaaagtgcttaagaggaccaca |
304 |
Q |
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| T |
34555146 |
ccttactacttttatattcagagattatgaaggcacggatgaagagtttgaacttataagttacattttaaatagtggaaaagtgcttaagagaaccaca |
34555245 |
T |
|
| Q |
305 |
atttatttcggaagtagctg--ggaa-ccaagcgaggcaagagatgctgtgtcggaattatgttccttgccaaaagcctcaaaagataacagga |
395 |
Q |
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|||||||| | |||||||| |||| ||||||||| |||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
34555246 |
atttattttgagagtagctgctggaatccaagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacagga |
34555339 |
T |
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