View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_11 (Length: 340)
Name: NF18219_low_11
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 4596053 - 4595733
Alignment:
| Q |
1 |
gagaaaaatgattcgaatcataatttatatgataatatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttgacacaccaacttgt |
100 |
Q |
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| T |
4596053 |
gagaaaaatgattcgaatcataatttatatggtaacatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttgacacaccaacttgt |
4595954 |
T |
|
| Q |
101 |
tcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtactttgcaaatactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595953 |
tcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtactttgcaaatactat |
4595854 |
T |
|
| Q |
201 |
aagacttcattcaaaacaatctaaaataaactaatcaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaaataaacgaacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595853 |
aagacttcattcaaaacaatctaaaataaactaattaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaaataaacgaacttt |
4595754 |
T |
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| Q |
301 |
ttagatttgtactattcacat |
321 |
Q |
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||||||||||||||||||||| |
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| T |
4595753 |
ttagatttgtactattcacat |
4595733 |
T |
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