View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18219_low_13 (Length: 286)

Name: NF18219_low_13
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18219_low_13
NF18219_low_13
[»] chr7 (4 HSPs)
chr7 (13-268)||(14729229-14729484)
chr7 (194-242)||(1095059-1095107)
chr7 (183-245)||(7638409-7638471)
chr7 (152-254)||(14740897-14740999)
[»] chr5 (2 HSPs)
chr5 (13-268)||(17594003-17594258)
chr5 (194-242)||(9891799-9891847)
[»] chr4 (6 HSPs)
chr4 (170-267)||(31239859-31239956)
chr4 (170-267)||(31256356-31256453)
chr4 (170-255)||(54220380-54220465)
chr4 (147-245)||(31219136-31219234)
chr4 (145-267)||(31274742-31274864)
chr4 (194-254)||(31278605-31278665)
[»] chr3 (1 HSPs)
chr3 (170-267)||(16130594-16130691)
[»] chr2 (1 HSPs)
chr2 (146-246)||(40451649-40451749)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 14729229 - 14729484
Alignment:
Q  13 aatatcagcattttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14729229 aatatcagctttttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt 14729328  T
Q  113 tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14729329 tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta 14729428  T
Q  213 cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14729429 cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaat 14729484  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 1095107 - 1095059
Alignment:
Q  194 gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaa 242  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  1095107 gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa 1095059  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 7638471 - 7638409
Alignment:
Q  183 tccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat 245  Q
    |||||||||| ||||||| ||||||||||| | ||||||| |||||||| ||||| |||||||    
T  7638471 tccactttgttgctaatacggaagttcttataacatctttggtagggagcaaagatagaatat 7638409  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 14740897 - 14740999
Alignment:
Q  152 tcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaa 251  Q
    |||||||  ||||| || |||||||||||| |||||||||  | |||||| |||||||| || || ||||| || | ||||||||||||||||| | |||    
T  14740897 tcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaa 14740996  T
Q  252 gaa 254  Q
    |||    
T  14740997 gaa 14740999  T

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Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 17594258 - 17594003
Alignment:
Q  13 aatatcagcattttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17594258 aatatcagctttttgtacttgaacgcaaagtctttctacatggttagatgtgtgaagtagtttgtccacccaatctatgaggcaattttccgactcctgt 17594159  T
Q  113 tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17594158 tctggctttgatacatccggattacaagaaacttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttctta 17594059  T
Q  213 cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17594058 cagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaat 17594003  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 9891799 - 9891847
Alignment:
Q  194 gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaa 242  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  9891799 gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa 9891847  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 31239859 - 31239956
Alignment:
Q  170 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaa 267  Q
    |||||||| | |||||||||  |||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||  ||||||||||    
T  31239859 gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaa 31239956  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 31256356 - 31256453
Alignment:
Q  170 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaa 267  Q
    |||||||| | |||||||||  |||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||  ||||||||||    
T  31256356 gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaa 31256453  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 54220380 - 54220465
Alignment:
Q  170 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaac 255  Q
    |||||||||| |||||||||| |  |||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  54220380 gtccacaagtgtttccactttttcactaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaac 54220465  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 31219136 - 31219234
Alignment:
Q  147 gaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat 245  Q
    |||||||||||| || ||| || |||||||||||| |||||||||| |||||||| |||||||||||||| ||||  |||| |||   |||||||||||    
T  31219136 gaaaatcaaagacgggtaattgggtccacaagtatctccactttgttgctaatatagaagttcttacagcctcttccgtagagaggcgagaaagaatat 31219234  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 31274742 - 31274864
Alignment:
Q  145 ttgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaata 244  Q
    ||||||||||||||  ||||| |  |||||||| ||  |||||||  | ||||| | ||||||||||||| ||||||   |||| |||||||||||||||    
T  31274742 ttgaaaatcaaagacagataagtaggtccacaaatacctccacttctttgctaacacggaagttcttacaacatcttcgataggtagtaaagaaagaata 31274841  T
Q  245 tgaagaagaacagcctcgggtaa 267  Q
    |||||||||||| |||| |||||    
T  31274842 tgaagaagaacaccctcaggtaa 31274864  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 31278605 - 31278665
Alignment:
Q  194 gctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaa 254  Q
    |||||||||||||||| ||| |||||||| | ||||||||| |||||||| ||| ||||||    
T  31278605 gctaatatggaagttcctacggcatctttggcagggagtaacgaaagaatgtgatgaagaa 31278665  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 16130691 - 16130594
Alignment:
Q  170 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaa 267  Q
    ||||||||||  ||||||||  | |||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||| |||||    
T  16130691 gtccacaagtgcttccacttctttgctagtatggaagttcttacaacatctttggtcgggagtaaagaaagaatatgaagaagaacggcctcaggtaa 16130594  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 40451649 - 40451749
Alignment:
Q  146 tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat 245  Q
    ||||||||| ||| |||||| || |||||||||||  |||||||||| ||||||||||| ||| | |||||||| || || | ||| || ||||||||||    
T  40451649 tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat 40451748  T
Q  246 g 246  Q
    |    
T  40451749 g 40451749  T

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