View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_16 (Length: 236)
Name: NF18219_low_16
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_16 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 30264171 - 30264396
Alignment:
| Q |
11 |
gcagaacctgtgaaccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaatt |
110 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30264171 |
gcagaaactctgaaccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactccatccaaaatcagagattgaatt |
30264270 |
T |
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| Q |
111 |
gaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264271 |
gaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaa |
30264370 |
T |
|
| Q |
211 |
ggatcatcagctctatgaagacaaga |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30264371 |
ggatcatcagctctatgaagacaaga |
30264396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 30288017 - 30287792
Alignment:
| Q |
11 |
gcagaacctgtgaaccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaatt |
110 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30288017 |
gcagaaactctgaaccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactccatccaaaatcagagattgaatt |
30287918 |
T |
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| Q |
111 |
gaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287917 |
gaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaa |
30287818 |
T |
|
| Q |
211 |
ggatcatcagctctatgaagacaaga |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30287817 |
ggatcatcagctctatgaagacaaga |
30287792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 30271079 - 30271290
Alignment:
| Q |
25 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
124 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
30271079 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggagaata |
30271178 |
T |
|
| Q |
125 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
224 |
Q |
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|||||||||| |||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
30271179 |
tggttgaaggaaaccacttgaaaaaacctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctct |
30271278 |
T |
|
| Q |
225 |
atgaagacaaga |
236 |
Q |
| |
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|| |||||||| |
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| T |
30271279 |
ttgtagacaaga |
30271290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 30281110 - 30280899
Alignment:
| Q |
25 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
124 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
30281110 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggagaata |
30281011 |
T |
|
| Q |
125 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
224 |
Q |
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|||||||||| |||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
30281010 |
tggttgaaggaaaccacttgaaaaaacctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctct |
30280911 |
T |
|
| Q |
225 |
atgaagacaaga |
236 |
Q |
| |
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|| |||||||| |
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| T |
30280910 |
ttgtagacaaga |
30280899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 30304146 - 30304357
Alignment:
| Q |
25 |
ccttcgtcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatgctccatccaaaatcagagattgaattgaaaagggagaata |
124 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||| |
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| T |
30304146 |
ccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctccatccaaaatcagagaaggaattgaaaaaggggaata |
30304245 |
T |
|
| Q |
125 |
tggttgaagggaaccacttgaaaaagcctctcttgggagttaacaattgtgatgacttgcggttaggaaaagacaaaggaagagaaggatcatcagctct |
224 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
30304246 |
tggttgaagggaaccacttgaaaaagcctttcttgggagataacaattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcaactct |
30304345 |
T |
|
| Q |
225 |
atgaagacaaga |
236 |
Q |
| |
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|| |||||||| |
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| T |
30304346 |
ttgtagacaaga |
30304357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 30032301 - 30032348
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaaga |
236 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
30032301 |
aggaaaagataaaggaagagaaggatcatcagctctttgaagacaaga |
30032348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 30048547 - 30048594
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaaga |
236 |
Q |
| |
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||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
30048547 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaaga |
30048594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 30062888 - 30062935
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaaga |
236 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
30062888 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaaga |
30062935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 30220378 - 30220331
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaaga |
236 |
Q |
| |
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||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
30220378 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaaga |
30220331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 30228686 - 30228733
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaaga |
236 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||| |
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|
| T |
30228686 |
aggaaaagatagaggaagagaaggatcatcagctctttgaagacaaga |
30228733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 2311488 - 2311456
Alignment:
| Q |
189 |
aggaaaagacaaaggaagagaaggatcatcagc |
221 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
2311488 |
aggaaaagacaaaggaagagatggatcatcagc |
2311456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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