View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_3 (Length: 544)
Name: NF18219_low_3
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 484
Target Start/End: Original strand, 20608 - 21093
Alignment:
| Q |
5 |
agtgagatgaagtttatctttgagcttcccaagaataatggaaaattgaatattgtcaggtgtggactgctgttgtttcagctgcatcatcgaaatcaaa |
104 |
Q |
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| T |
20608 |
agtgcgatgaagtttatctttgagcttcccaagaataatggaaaattgaatattgtcaggtgtggactgctgttgtttcagctgcatcatcgaaatcaaa |
20707 |
T |
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| Q |
105 |
tcaaatctcaataagaatgttatgttaaagagaccgaatgaaaaggggaaaatggatctggattacattaccgggtctggccaattagattgttgaagtn |
204 |
Q |
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| T |
20708 |
tcaaatctcaataagaatgttatgttaaagagaccgagtgaaaaggggaaaatggatctggattacattaccgggtctggccaattagattgttgaagta |
20807 |
T |
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| Q |
205 |
nnnnnntggtttcttcaatatattctcgattcttccacatgttttcatcaatcttatggggaggttgggtgaaagtgagagcttcatcatcaattcccaa |
304 |
Q |
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| T |
20808 |
aaaaaatggtttcttcaatatattctcgattcttccacatgttttcatcaatcttatggggaggttgggtgaaagtgagagcttcatcatcaattcccaa |
20907 |
T |
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| Q |
305 |
atcagtggccatagtacgaagcagagaagtaaggtgagagacgtctggagaaagaggaggagtgaaggggtgtttgtcgtagtaagacgacaggaaggcc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20908 |
atcagtggccatagtacgaagcagagaagtaaggtgagagacgtctgaagaaagaggaggagtgaaggggtgtttgtcgtagtaagacgacaggaaggcc |
21007 |
T |
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| Q |
405 |
ctagttatgggcaccaaaccctctgtagaagcagcc------atcggaatcggaggattggattatcagacagatctaaatcccac |
484 |
Q |
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| T |
21008 |
ctagttatgggcaccaaaccctctgtagaagcagccatcggaatcggaatcggaggattggattatcagacagatctaaatcccac |
21093 |
T |
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