View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_4 (Length: 504)
Name: NF18219_low_4
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 28030086 - 28030579
Alignment:
| Q |
11 |
atcatcacgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacacc |
110 |
Q |
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| T |
28030086 |
atcatctcgccttttgtgaattcatccacgcaaataggacaatcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacacc |
28030185 |
T |
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| Q |
111 |
tagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcattatttctattttc |
210 |
Q |
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| T |
28030186 |
tagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcattatttctattttc |
28030285 |
T |
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| Q |
211 |
tctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaaaactattatcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030286 |
cctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaaaactattatcc |
28030385 |
T |
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| Q |
311 |
atttttccatattctctaaagaactgtacacatattaacaaaaagatcaaagccaatatacaaatcaaataaataaatgtatgcgagccatgcggcaaca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030386 |
atttttccatattctctaaagaactgtacacatattaacaaaaagatcaaagccaatatacaaatcaaataaataaatgtatgcgagccatgcggcaaca |
28030485 |
T |
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| Q |
411 |
atgacacaggaatgagtagcatgataattgtgaacgatacacaaccccaatttgccattgtgacatacgtagagaagaaggaatgaaagaaagt |
504 |
Q |
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| T |
28030486 |
atgacacaggaatgagtagcatgataattgtgaacgatacacaaccccaatttgccattgtcacatacgtagagaagaaggaatgaaagaaagt |
28030579 |
T |
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