View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18219_low_5 (Length: 502)

Name: NF18219_low_5
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18219_low_5
NF18219_low_5
[»] chr4 (16 HSPs)
chr4 (15-484)||(55664100-55664573)
chr4 (64-301)||(55636479-55636719)
chr4 (364-484)||(52983393-52983513)
chr4 (62-153)||(52984695-52984786)
chr4 (373-484)||(54629808-54629918)
chr4 (304-484)||(55636752-55636925)
chr4 (391-484)||(55626817-55626910)
chr4 (391-484)||(55619513-55619606)
chr4 (391-484)||(55657863-55657956)
chr4 (149-255)||(52983850-52983958)
chr4 (62-164)||(54628234-54628338)
chr4 (19-144)||(55627168-55627292)
chr4 (422-477)||(54861298-54861353)
chr4 (444-484)||(51316242-51316282)
chr4 (19-144)||(55619864-55619988)
chr4 (19-144)||(55658214-55658338)
[»] chr8 (2 HSPs)
chr8 (109-287)||(9890819-9890998)
chr8 (364-484)||(9891090-9891212)
[»] chr2 (1 HSPs)
chr2 (64-160)||(13402857-13402954)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Complemental strand, 55664573 - 55664100
Alignment:
Q  15 cagagagcagatacaagtaggttactaaatctcatcttttttattatatactcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664573 cagagagcagatacaagtaggttactaaatctcatcttttttattatatactcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctt 55664474  T
Q  115 tattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtgatagttaccat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664473 tattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtgatagttaccat 55664374  T
Q  215 tgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgactagaaacccttatttctatgtattgtga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664373 tgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgactagaaacccttatttctatgtattgtga 55664274  T
Q  315 tgcttgactattgacagatggtttctgttttgggttgggtcttgactcctgagttctgtttgcattttactgccatgtatgtgatttttagttggcttat 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664273 tgcttgactattgacatatggtttctgttttgggttgggtcttgactcctgagttctgtttgcattttactgccatgtatgtgatttttagttggcttat 55664174  T
Q  415 ttaccgaaaaagcactctgaactctagcttttatg----tatgttgcaggctgttattgaagctggtctaattg 484  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  55664173 ttaccgaaaaagcactctgaactctagcttttatgtatatatgttgcaggctgttattgaagctggtctaattg 55664100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 64 - 301
Target Start/End: Original strand, 55636479 - 55636719
Alignment:
Q  64 actcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcata 163  Q
    |||||||||||||| |||||||  |||||| || ||||||||  |||||||||||||| ||| | ||||||| |||||||||||||| || |||||||||    
T  55636479 actcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttcatgtttgatgtttgggcattacatgcata 55636578  T
Q  164 ttaatcaaag-gtacacgttgtttaacatggagatgtggtg--atagttaccattgtagctttgttggtgatatatttagttctctggttacaccaatca 260  Q
    | |||  |||  |||| ||||||||||||||||||||||||  ||| | ||||||||||  |||||| ||||||||| ||||| | ||||||||||||||    
T  55636579 taaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttgatgatatattcagttcacaggttacaccaatca 55636678  T
Q  261 aagtaatagttggactgttaggtgactagaaacccttattt 301  Q
     |||| |||||||  |||| ||||||   ||||||||||||    
T  55636679 gagtattagttgggttgttcggtgaccgtaaacccttattt 55636719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 484
Target Start/End: Complemental strand, 52983513 - 52983393
Alignment:
Q  364 tgagttctgtttgcattttactgccatgtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctg 463  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| | |||||||    
T  52983513 tgagttttgtttgcgttttactaccaagtatgtgatttttagttggcttatttaccgaaaaagcgctatgaactctaccttttatgtatgatacaggctg 52983414  T
Q  464 ttattgaagctggtctaattg 484  Q
    |||||||||||||||| ||||    
T  52983413 ttattgaagctggtctgattg 52983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 52984786 - 52984695
Alignment:
Q  62 atactcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatgtttgggtat 153  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||| ||||||| ||||||||||||||||||    
T  52984786 atactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtttcttctagtttgatgtttgggtat 52984695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 54629808 - 54629918
Alignment:
Q  373 tttgcattttactgccatgtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaag 472  Q
    ||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||   |||||||||||||||||    
T  54629808 tttgcattttactgccaagtacat-atttttagttggcttatttaccgaaaaagcactctaaactctaccttttatgcattacgcaggctgttattgaag 54629906  T
Q  473 ctggtctaattg 484  Q
    ||||||| ||||    
T  54629907 ctggtctgattg 54629918  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 304 - 484
Target Start/End: Original strand, 55636752 - 55636925
Alignment:
Q  304 atgtattgtgatgcttgactattgacag-atggtttctgttttgggttgggtcttgactcctgagttctgtttgcattttactgccatgtatgtgatttt 402  Q
    |||||||||||||||||||||||||||  ||| |||||||| | ||||||||||||| |       | ||||| |||||||||||| |||||| ||||||    
T  55636752 atgtattgtgatgcttgactattgacattatgttttctgttctaggttgggtcttgatt-------tttgttttcattttactgccttgtatgggatttt 55636844  T
Q  403 tagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattg 484  Q
      ||||  || |||||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||    
T  55636845 atgttgctttctttacc-aaaatgcactctgaactctaccttttatgtatgatgcaggctgttattgaagctagtctgattg 55636925  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 55626910 - 55626817
Alignment:
Q  391 gtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattg 484  Q
    |||||||||||||||||| ||||||||||||||||||  | ||||||| | |||||||||||  ||||||||||||| ||||||||||| ||||    
T  55626910 gtatgtgatttttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcgaagctggtctgattg 55626817  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 55619606 - 55619513
Alignment:
Q  391 gtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattg 484  Q
    |||||||||||||||||| ||||||||||||||||||  | ||||||| | |||||||||||  |||||||||||||  |||||||||| ||||    
T  55619606 gtatgtgatttttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattg 55619513  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 55657956 - 55657863
Alignment:
Q  391 gtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggtctaattg 484  Q
    |||||||||||||||||| ||||||||||||||||||  | ||||||| | |||||||||||  |||||||||||||  |||||||||| ||||    
T  55657956 gtatgtgatttttagttgccttatttaccgaaaaagcgttgtgaactcaaccttttatgtataatgcaggctgttatcaaagctggtctgattg 55657863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 52983958 - 52983850
Alignment:
Q  149 ggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtg--atagttaccattgtagctttgttggtgatatatttagttctct 246  Q
    |||||||||||||||| |||  ||| |||| ||||||||| ||||||||||||||  ||||| ||||||| ||  || ||| || ||||||||||||||     
T  52983958 ggtatcacatgcatataaattgaagctacatgttgtttaaaatggagatgtggtgctatagtaaccattgcagtcttcttgatggtatatttagttctca 52983859  T
Q  247 ggttacacc 255  Q
    |||||||||    
T  52983858 ggttacacc 52983850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 54628234 - 54628338
Alignment:
Q  62 atactcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtt---tgatgtttgggtatcacat 158  Q
    |||||||||||||| ||||| ||||| ||||| |||| ||||||  |||||||||  ||||||| ||| |||||||||   |||||||||||||||||||    
T  54628234 atactcaaatgatgctaaatttcatgcttaataaagtacaatgttaatttcttta-agctcatgttttgcttcaagtttgatgatgtttgggtatcacat 54628332  T
Q  159 gcatat 164  Q
     |||||    
T  54628333 acatat 54628338  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 55627292 - 55627168
Alignment:
Q  19 gagcagatacaagtaggttactaaatctcatcttttttattatatactcaaatgatgttaaatatc----atgtttaatgaagtgcaatgtcgatttctt 114  Q
    |||| |||||||||| | || |||||| ||||||||||||     |||||||| |||||| |||||    |||| |||| | |||||||||   |||||     
T  55627292 gagcggatacaagtaagctaataaatcccatcttttttat-----actcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctg 55627198  T
Q  115 tattgctcatgcttttcttcaagtttgatg 144  Q
    ||||||| ||||||||||||||||||||||    
T  55627197 tattgcttatgcttttcttcaagtttgatg 55627168  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 54861353 - 54861298
Alignment:
Q  422 aaaagcactctgaactctagcttttatgtatgttgcaggctgttattgaagctggt 477  Q
    |||||| |||||||||||| ||| |||||| | |||||||||| ||||||||||||    
T  54861353 aaaagcgctctgaactctaccttatatgtacggtgcaggctgtcattgaagctggt 54861298  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 51316242 - 51316282
Alignment:
Q  444 tttatgtatgttgcaggctgttattgaagctggtctaattg 484  Q
    |||||||| | ||||||||||||||||||||||||| ||||    
T  51316242 tttatgtacgatgcaggctgttattgaagctggtctcattg 51316282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 55619988 - 55619864
Alignment:
Q  19 gagcagatacaagtaggttactaaatctcatcttttttattatatactcaaatgatgttaaatatc----atgtttaatgaagtgcaatgtcgatttctt 114  Q
    |||| |||||||||| | || |||||| ||||||||||||     |||||||| |||||| |||||    |||| |||| | |||||||||   |||||     
T  55619988 gagcggatacaagtaagctaataaatcccatcttttttat-----actcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctg 55619894  T
Q  115 tattgctcatgcttttcttcaagtttgatg 144  Q
    ||||||| ||||||||||||||||| ||||    
T  55619893 tattgcttatgcttttcttcaagttagatg 55619864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 55658338 - 55658214
Alignment:
Q  19 gagcagatacaagtaggttactaaatctcatcttttttattatatactcaaatgatgttaaatatc----atgtttaatgaagtgcaatgtcgatttctt 114  Q
    |||| |||||||||| | || |||||| ||||||||||||     |||||||| |||||| |||||    |||| |||| | |||||||||   |||||     
T  55658338 gagcggatacaagtaagctaataaatcccatcttttttat-----actcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctg 55658244  T
Q  115 tattgctcatgcttttcttcaagtttgatg 144  Q
    ||||||| ||||||||||||||||| ||||    
T  55658243 tattgcttatgcttttcttcaagttagatg 55658214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 109 - 287
Target Start/End: Original strand, 9890819 - 9890998
Alignment:
Q  109 tttctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcatattaatcaaaggtacacgttgtttaacatggagatgtggtg--ata 206  Q
    ||||||||||||| ||||||||||||||||||||||  |||||| ||||||||||| |||  ||  |||| |||||||||||||||||||| |||  |||    
T  9890819 tttctttattgcttatgcttttcttcaagtttgatgcctgggta-cacatgcatataaattgaaactacatgttgtttaacatggagatgttgtgcaata 9890917  T
Q  207 gttaccattgtagctttgttggtgatatatttagttctctggttacaccaatcaaagtaatagttggactgttaggtgact 287  Q
     | || |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9890918 ataactattgtagtcttgttgatgatatatttagttctctggttacaccaatcaaagtaatagttggattgttaggtgact 9890998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 9891090 - 9891212
Alignment:
Q  364 tgagttctgtttgcattttactgccatgtatgtgatttttagttggcttatttaccgaaaaagcactctgaactctagctttta--tgtatgttgcaggc 461  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||  ||||||  |||||| ||  ||||||||||| ||||||  |||||| |||||||    
T  9891090 tgagttttgtttgcattttactgccaggtatgtgaattttagttgttttatttttcgaaaaggccgtctgaactctaccttttatgtgtatgatgcaggc 9891189  T
Q  462 tgttattgaagctggtctaattg 484  Q
    |||||||||||||||||| ||||    
T  9891190 tgttattgaagctggtctgattg 9891212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 13402857 - 13402954
Alignment:
Q  64 actcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatg--tttgggtatcacatgc 160  Q
    |||||| |||||||||||||||||| |||| || ||||||||  || || |||||| | |||||||| ||||| |||||||  ||||||||||||||||    
T  13402857 actcaattgatgttaaatatcatgtctaattaaatgcaatgttaatatc-ttattgtttatgcttttattcaattttgatgtttttgggtatcacatgc 13402954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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