View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18219_low_6 (Length: 444)
Name: NF18219_low_6
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18219_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 92 - 426
Target Start/End: Complemental strand, 24480543 - 24480205
Alignment:
| Q |
92 |
caaggattatgaaaagtttatcataaaattacttttcataatcccaaaacttnnnnnnnctactcactcatcataaggacgagtttgattaaataacata |
191 |
Q |
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| T |
24480543 |
caaggattatgaaaagtttatcataaaattacttttcataatcccaaaacttaaaaaaactactcactcatcataaggacgagtttaattaaataacata |
24480444 |
T |
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| Q |
192 |
aagacaatgcaagaaataaaaacaagaaaactatattgaaagaacaatgcaaatacaagataaatttggtgctaagttatgtcaaatcaaagagagaacc |
291 |
Q |
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| T |
24480443 |
aagacaatgcaagaaataaaaacaagaaaactatattgaaagaacaatgcaaatacaagataaatttggtgctaagttatgtcaaatcaaagagagaacc |
24480344 |
T |
|
| Q |
292 |
taagtataacatcaaaagacttggattaaattacattacaaaag-atcattttagtt-ctt--nnnnnnnnnnnnnnncaataatcatagagttatgcag |
387 |
Q |
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| T |
24480343 |
taagtataacatcaaaagacttggattaaattacattacaaaagaatcattttagttactttaaaaaaaaaaaaaaacaaataatcatagagttatgcag |
24480244 |
T |
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| Q |
388 |
ctcattttgtcgtagcccctcattaagggtgaccgtaac |
426 |
Q |
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| T |
24480243 |
ctcattttgtcgtagcccctcattacgggtgaccgtaac |
24480205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24480633 - 24480596
Alignment:
| Q |
1 |
ctaacttagtttaaacggtgagatgacacgaacatgac |
38 |
Q |
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| T |
24480633 |
ctaacttggtttaaacggtgagatgacacgaacatgac |
24480596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 2497372 - 2497433
Alignment:
| Q |
163 |
cataaggacgagtttgattaaataacataaagacaatgcaagaaataaaaacaagaaaacta |
224 |
Q |
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| T |
2497372 |
cataaggacgaacttaactaaataaaataaagagaatgcaaaaagtaaaaacaagaaaacta |
2497433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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