View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18219_low_9 (Length: 396)

Name: NF18219_low_9
Description: NF18219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18219_low_9
NF18219_low_9
[»] chr6 (1 HSPs)
chr6 (83-380)||(23589514-23589803)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 83 - 380
Target Start/End: Original strand, 23589514 - 23589803
Alignment:
Q  83 gaccgctgctgatgatcaccctctcctgtgcttgtcgtgaacattacaacctttcggactgctgatctgctgatcaattatttattctcggctagatcca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||     
T  23589514 gaccgctgctgatgatcaccctctcctgtgcttgtcgtgaacattaaaacctttcggactgc--------tgatcaattatttattctcggctagatccg 23589605  T
Q  183 agaaattgtgaaataattattttgctttaaatattggaaatgatttgggatctcttgactccaagagtaactctgaaatgagtttctccgtttaatcgtt 282  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  23589606 agaaattgtgaaatcatgattttgctttaaatattggaaatgattcgggatctcttgacttcaagagtaactctgaaatgagtttctccgttcaatcgtt 23589705  T
Q  283 atgtacttggttctgtactttctatgcccttttaatgtttttgtgaaaatttaatcataatactctgatttaccttatgcacagtcggcttccatttt 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  23589706 atgtacttggttctgtactttttatgcccttttaatgtttttgtgaaaatttaatcttaatactctgatttaccttatgcacagtcgacttccatttt 23589803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University