View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18220_low_1 (Length: 446)
Name: NF18220_low_1
Description: NF18220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18220_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 433
Target Start/End: Complemental strand, 41785822 - 41785410
Alignment:
| Q |
21 |
cgacgttcattttctttatccaatccttcgcaaactgaacctcacaaagcattttagacacattgctcatgacacactctctgtgttcctcgacttttgc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41785822 |
cgacgttcattttctttatccaatccttcgcaaactgaacctcacaaagcattttagacacattgctcatgacacactctctgtgttcctcgactttcgc |
41785723 |
T |
|
| Q |
121 |
agccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccactggtgagtgtgtttcctcacttgcagttgcagtaacatta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41785722 |
agccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccactggtgagtgtgtttcctcacttgcatttgcagtaacatta |
41785623 |
T |
|
| Q |
221 |
gcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785622 |
gcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgc |
41785523 |
T |
|
| Q |
321 |
aactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785522 |
aactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaa |
41785423 |
T |
|
| Q |
421 |
ttcttccattttc |
433 |
Q |
| |
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||||||||||||| |
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| T |
41785422 |
ttcttccattttc |
41785410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 433
Target Start/End: Complemental strand, 10834795 - 10834629
Alignment:
| Q |
268 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
367 |
Q |
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|||||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||| |
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| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
|
| Q |
368 |
tggtgcaacaag-cggatattgtcttccattttcttcctcaacttttctgccaattcttccattttc |
433 |
Q |
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| |||||||||| | ||||||| ||||||| ||| || || | | |||||||||||||||||||| |
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| T |
10834695 |
tagtgcaacaagccctatattgttttccattctctatctaaaatctcctgccaattcttccattttc |
10834629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 10835178 - 10835068
Alignment:
| Q |
26 |
ttcattttctttatccaatccttcgcaaactgaacctcacaaagcattttagacacattgctcatgacacactctctgtgttcctcgacttttgcagcca |
125 |
Q |
| |
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|||||||||||||||| |||||| |||||| ||||||| || |||||||| ||| ||||||||||||| | ||||||||||| |||||||||| |
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| T |
10835178 |
ttcattttctttatcctatccttagcaaaccgaacctc----agaattttagaaacactgctcatgacaca--cactgtgttcctcaacttttgcagttg |
10835085 |
T |
|
| Q |
126 |
ctacatctaatccattt |
142 |
Q |
| |
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||||||||||||||||| |
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| T |
10835084 |
ctacatctaatccattt |
10835068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 401
Target Start/End: Original strand, 2281450 - 2281576
Alignment:
| Q |
275 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
374 |
Q |
| |
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||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
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| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
2281549 |
T |
|
| Q |
375 |
acaagcggatattgtcttccattttct |
401 |
Q |
| |
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| | | ||||| ||||||||||||| |
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| T |
2281550 |
atatatgtatattatcttccattttct |
2281576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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