View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18220_low_3 (Length: 240)
Name: NF18220_low_3
Description: NF18220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18220_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 35637375 - 35637154
Alignment:
| Q |
18 |
cagctggctcattcaatattgcaatgatgaagttagttacattctgttaggattctgttgagactgttttcagttaattgagtctattttacccttcatt |
117 |
Q |
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| T |
35637375 |
cagctggctcattcaatattgcaatgatgaagttagttacattctgttgggattctgttgagactgttttcagttaattgagtctattttacccttcatt |
35637276 |
T |
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| Q |
118 |
tcacatatataaataccatatagaatattcattcattcacattcactattttccatacttcaaatcattactctttcacttacaatcaaaatcactctct |
217 |
Q |
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| T |
35637275 |
tcacatatataaatatcata-ggaatattcattcattcacattcactattttccatacttcaaatcattactctttcacttacaatcaaaatcactctct |
35637177 |
T |
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| Q |
218 |
tttctcacatttccttctccttc |
240 |
Q |
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| T |
35637176 |
tttctcacatttccttctccttc |
35637154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 35630804 - 35630724
Alignment:
| Q |
144 |
attcattcattcacattcactattttccatacttcaaatcattactctttcacttacaatcaaaatcactctcttttctca |
224 |
Q |
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| T |
35630804 |
attcattcaatcacattcacaattttccatacttcaaatcattactctctcactcacaatcaaaatcactctctttgctca |
35630724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 35633451 - 35633403
Alignment:
| Q |
32 |
aatattgcaatgatgaagttagttacattctgttaggattctgttgaga |
80 |
Q |
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| T |
35633451 |
aatattgtaatgacgaagttagttaaattctgttaggtttctgttgaga |
35633403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 10318236 - 10318280
Alignment:
| Q |
32 |
aatattgcaatgatgaagttagttacattctgttaggattctgtt |
76 |
Q |
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| T |
10318236 |
aatattgcaatgacaaagttagttaaattctgttaggtttctgtt |
10318280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 10335482 - 10335526
Alignment:
| Q |
32 |
aatattgcaatgatgaagttagttacattctgttaggattctgtt |
76 |
Q |
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| T |
10335482 |
aatattgcaatgacaaagttagttaaattctgttaggtttctgtt |
10335526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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