View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18221_high_1 (Length: 452)
Name: NF18221_high_1
Description: NF18221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18221_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 43339413 - 43339840
Alignment:
| Q |
11 |
cagagaacaaccattctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatg |
110 |
Q |
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| T |
43339413 |
cagagaacaaccattctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatg |
43339512 |
T |
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| Q |
111 |
tggatttggagatggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgatac |
210 |
Q |
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| T |
43339513 |
tggatttggagatggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgatac |
43339612 |
T |
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| Q |
211 |
cttctgctggctgcccgacgaaggagcagggttcttggtgnnnnnnnnttctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagatt |
310 |
Q |
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| T |
43339613 |
cttctgctggctgcccgacgaaggagcagggttcttggtgaaaaaaaattctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagatt |
43339712 |
T |
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| Q |
311 |
attgtggcagcagcttcgcagatttggagcaggctgccagctagagtggaattgcggagaagggaagtaataagagatgttcaccgacaatgt--tgtgt |
408 |
Q |
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| T |
43339713 |
attgtggcagcagcttcgcagatttggagcaggctgccaactagagtggaattgcggagaagggaagtaataagagatgttcaccgacaatgttgtgtgt |
43339812 |
T |
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| Q |
409 |
gtgctgctttagagaaattgaaacatct |
436 |
Q |
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| T |
43339813 |
gtgctgctttagagaaattgaaacatct |
43339840 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 1015088 - 1015051
Alignment:
| Q |
399 |
aatgttgtgtgtgctgctttagagaaattgaaacatct |
436 |
Q |
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| T |
1015088 |
aatgttgtgtgtggtgctttagagaaattgaaacatct |
1015051 |
T |
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