View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18221_high_2 (Length: 366)
Name: NF18221_high_2
Description: NF18221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18221_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 24377809 - 24377473
Alignment:
| Q |
1 |
tgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgatgata |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24377809 |
tgcacaagaaagtaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccgataacaccagtgatgata |
24377710 |
T |
|
| Q |
101 |
tgagccaaggcactctttaaatttcctgcagaatttgtagcagaataaaaccttagtattcaaattgatgcatatgaaaatgaaaatgaattggttatga |
200 |
Q |
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| T |
24377709 |
tgagccaaggcactctttaaatttcctgcagaatttgtagcaggataaaagcttagtattcaaatgcatgcatatgaaaa------tgaattggttatga |
24377616 |
T |
|
| Q |
201 |
agcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
24377615 |
agcaatttagaattttaccagtccttttggcatgtccatcatcatcataagcaacagaagcagtcgttatttgtagagaattttgcttattcatctttat |
24377516 |
T |
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| Q |
301 |
ccaagcatatatatataactcaatggaagcttgagtttggtgcatat |
347 |
Q |
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|||||| ||||||||||||||||||| ||||||||| ||||||| |
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| T |
24377515 |
ccaagc----atatataactcaatggaagtttgagtttgctgcatat |
24377473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 24400652 - 24400410
Alignment:
| Q |
1 |
tgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgatgata |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||||||| | ||||||||| |
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| T |
24400652 |
tgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgatgata |
24400553 |
T |
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| Q |
101 |
tgagccaaggcactctttaaatttcctgcagaatttgtagcagaataaaaccttagtattcaaattgatgcatatgaaaatgaaaatgaattggttatga |
200 |
Q |
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| T |
24400552 |
tgagccacagcactttttacatttcctgcagaatttat-cccgaataaaacttcagtattcaaattcaagtat------atgaaaatcaattggttatga |
24400460 |
T |
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| Q |
201 |
agcaatttagaattttaccagtccttttggcatgtccatcatcatcataa |
250 |
Q |
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|| || ||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
24400459 |
tgctatagagaattttacctgtccttttggcacgtccgtcatcatcataa |
24400410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24413101 - 24412972
Alignment:
| Q |
1 |
tgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgatgata |
100 |
Q |
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|
||||||| ||||||| | || ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||| |
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| T |
24413101 |
tgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgatgata |
24413002 |
T |
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| Q |
101 |
tgagccaaggcactctttaaatttcctgca |
130 |
Q |
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| T |
24413001 |
tgagccacagcactctttaaatttcctgca |
24412972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 24420940 - 24421069
Alignment:
| Q |
1 |
tgcacaagaaagcaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccaataacaccagtgatgata |
100 |
Q |
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|
||||||| ||||||| | || ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||| |
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| T |
24420940 |
tgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgatgata |
24421039 |
T |
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| Q |
101 |
tgagccaaggcactctttaaatttcctgca |
130 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
24421040 |
tgagccacagcactctttaaatttcctgca |
24421069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 24412885 - 24412796
Alignment:
| Q |
216 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | || ||| |||||||||| |
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| T |
24412885 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24412796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 24421156 - 24421245
Alignment:
| Q |
216 |
taccagtccttttggcatgtccatcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | || ||| |||||||||| |
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| T |
24421156 |
taccagtcctttttgcatgtccatcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24421245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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