View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18221_high_3 (Length: 284)
Name: NF18221_high_3
Description: NF18221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18221_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 22339453 - 22339180
Alignment:
| Q |
1 |
aatgtcccacaactttcactctcttttccttcatcaatttcactaatccaatagaacgatccacaagtggatcaccatcacaatcagtcaccaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
22339453 |
aatgtcccacaactttcactctcttttcctccatcaatctcactaacccaatagaacgatccacaactggatcaccatcacaatcagtcaccaacacaca |
22339354 |
T |
|
| Q |
101 |
ccacccaagtcttctaatattttccaatcccaaaacattatctcccaccgttggattacaatactcataatcacggtcaactccaacgggtaatgataac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22339353 |
ccacccaagtcttctaatattttccaatcccaaaacactatctcccaccgttggattacaatactcataatcacggttaactccaacgggtaatgataac |
22339254 |
T |
|
| Q |
201 |
tcccacaacatatcattgctacacaataacaaatgagactcattagcaagcctaacctctgaatgtgtcctatg |
274 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22339253 |
tcccacaacatatcattgttacacaataacaaatgagactcattagcaagcctaacctctgaatgtgtcctatg |
22339180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 46138590 - 46138630
Alignment:
| Q |
147 |
accgttggattacaatactcataatcacggtcaactccaac |
187 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46138590 |
accgttggattacaatactcatgatcacggtcaactccaac |
46138630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 46140504 - 46140542
Alignment:
| Q |
146 |
caccgttggattacaatactcataatcacggtcaactcc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46140504 |
caccgttggattacaatactcataatcacgatcaactcc |
46140542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University