View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18221_low_4 (Length: 277)

Name: NF18221_low_4
Description: NF18221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18221_low_4
NF18221_low_4
[»] chr7 (4 HSPs)
chr7 (80-265)||(31200657-31200842)
chr7 (1-75)||(31200879-31200953)
chr7 (160-249)||(39051324-39051413)
chr7 (159-243)||(285651-285733)
[»] chr5 (6 HSPs)
chr5 (159-242)||(10353940-10354023)
chr5 (159-224)||(33900041-33900106)
chr5 (160-248)||(29638812-29638900)
chr5 (176-223)||(1623346-1623393)
chr5 (160-223)||(38475912-38475975)
chr5 (160-189)||(1436911-1436940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (160-254)||(250355-250449)
[»] chr8 (2 HSPs)
chr8 (160-249)||(3694151-3694240)
chr8 (160-212)||(14294405-14294457)
[»] chr4 (3 HSPs)
chr4 (160-248)||(19141972-19142060)
chr4 (160-248)||(41500069-41500157)
chr4 (160-254)||(43405533-43405627)
[»] chr3 (2 HSPs)
chr3 (160-248)||(675658-675746)
chr3 (159-254)||(27836735-27836828)
[»] chr1 (6 HSPs)
chr1 (160-248)||(4816197-4816285)
chr1 (160-248)||(22581695-22581783)
chr1 (160-248)||(34059766-34059854)
chr1 (159-244)||(8265646-8265729)
chr1 (195-248)||(10069247-10069300)
chr1 (159-195)||(12371580-12371616)
[»] scaffold0018 (1 HSPs)
scaffold0018 (159-254)||(38677-38770)
[»] chr2 (1 HSPs)
chr2 (159-257)||(40142214-40142312)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 80 - 265
Target Start/End: Complemental strand, 31200842 - 31200657
Alignment:
Q  80 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200842 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 31200743  T
Q  180 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcgttatatt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31200742 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcgttatatt 31200657  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31200953 - 31200879
Alignment:
Q  1 gaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgggtgt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200953 gaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgggtgt 31200879  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 249  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||||||| ||| |||||||||||||||| ||||||    
T  39051324 gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt 39051413  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 285651 - 285733
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatctt 243  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || |||||||||    
T  285651 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatctt 285733  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatct 242  Q
    |||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||||||||    
T  10354023 tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct 10353940  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa 224  Q
    |||||||||||||||||||||||||||||| || | | ||||| ||||||||||  ||||||||||    
T  33900106 tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa 33900041  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  29638900 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt 29638812  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q  176 attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 223  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||    
T  1623346 attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca 1623393  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 223  Q
    ||||||||||||||||||||||||  || | ||||| |||||| | ||| ||||||||||||||    
T  38475975 gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca 38475912  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgt 189  Q
    ||||||||||||||||||||||||||||||    
T  1436911 gttgaataatcaactcattatcaatgttgt 1436940  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 254  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||| ||||    
T  250355 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta 250449  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 249  Q
    ||||||||||||| ||||  ||||| |||||   || |||||| | |||||||||||||||||||| |||||||||||||||| ||||||    
T  3694151 gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt 3694240  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 14294457 - 14294405
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataa 212  Q
    ||||||||||| | | |||||||||| ||||||||| |||||| |||||||||    
T  14294457 gttgaataatccattaattatcaatggtgtcgaacacatctctcttaatataa 14294405  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 19142060 - 19141972
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  19142060 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 19141972  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  41500069 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 41500157  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 254  Q
    |||||||||||||||||| |||||| ||||||  ||||||||| | ||||||||| ||  |||||| |||||| || |||||| |||||| ||||    
T  43405627 gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta 43405533  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  675658 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 675746  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 254  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  27836828 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 27836735  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  4816285 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 4816197  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 22581783 - 22581695
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||  |||||| |||||    
T  22581783 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcccatcatctcccatt 22581695  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q  160 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  34059854 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt 34059766  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 8265646 - 8265729
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttc 244  Q
    ||||||| |||||||  ||||||||| ||||| || || |||||   |||||||||||||||||||| |||||| |||||||||||    
T  8265646 tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatcttc 8265729  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q  195 atatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 248  Q
    ||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10069300 atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt 10069247  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 12371580 - 12371616
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaaca 195  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  12371580 tgttgaataatcaactcatcatcaatgttgccgaaca 12371616  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 254  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  38770 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 38677  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q  159 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgc 257  Q
    ||||||||||||||||||  |||||||||||| |||| |   || | |||||||||||  |||||||  |||||||| |||||| |||||| |||||||    
T  40142312 tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc 40142214  T

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