View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18222_low_1 (Length: 879)
Name: NF18222_low_1
Description: NF18222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18222_low_1 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 828; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 18 - 873
Target Start/End: Complemental strand, 8317249 - 8316394
Alignment:
| Q |
18 |
atgtaggtcatgggatgccgcataataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgac |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8317249 |
atgtaggtcatgggatgccgcattataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgac |
8317150 |
T |
|
| Q |
118 |
caattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317149 |
caattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttga |
8317050 |
T |
|
| Q |
218 |
ggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317049 |
ggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaa |
8316950 |
T |
|
| Q |
318 |
aagataatgagatgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagta |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316949 |
aagataatgagatgtaagagcagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagta |
8316850 |
T |
|
| Q |
418 |
ttttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaat |
517 |
Q |
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| T |
8316849 |
ttttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaat |
8316750 |
T |
|
| Q |
518 |
ttacaaactgctgctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316749 |
ttacaaactgctgctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggc |
8316650 |
T |
|
| Q |
618 |
tttatgattgccgcaaacatgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtg |
717 |
Q |
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| T |
8316649 |
tttatgatttccgcaaacatgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtg |
8316550 |
T |
|
| Q |
718 |
gactatcaaataagataacaagagggagaaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattata |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8316549 |
gactatcaaataagataacaagagggagaaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattata |
8316450 |
T |
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| Q |
818 |
attgtatgataaatcaatatcatctaagtcgagcttggtaatggatgatgtccatc |
873 |
Q |
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| T |
8316449 |
attgtatgataaatcaatatcatctaagtcgagcttggtgatggatgatgtccatc |
8316394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
54 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
139 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 53 - 430
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
53 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
152 |
Q |
| |
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|||||||| ||||||||||| |||||||||| | |||| || ||||| || ||||||| |||| ||| |||||| |||| ||||||||| | | ||| |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
|
| Q |
153 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
252 |
Q |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
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| Q |
253 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
352 |
Q |
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|||||||||||||| ||| |||| | || ||| |||| ||||| || || | || ||||||||||| ||||||| || ||||||| |||| | |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
|
| Q |
353 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
430 |
Q |
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||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
115 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
214 |
Q |
| |
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||||||| |||||| |||| ||||||||| ||| ||| |||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| | |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
|
| Q |
215 |
tgaggagttttaggtgtccaaaatgaa |
241 |
Q |
| |
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|||||| ||| || ||| |||||||| |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
397 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
470 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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