View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18222_low_2 (Length: 808)

Name: NF18222_low_2
Description: NF18222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18222_low_2
NF18222_low_2
[»] chr3 (2 HSPs)
chr3 (71-792)||(37147161-37147885)
chr3 (14-68)||(37147077-37147131)
[»] chr4 (2 HSPs)
chr4 (588-719)||(7894431-7894562)
chr4 (581-660)||(35718141-35718220)
[»] chr2 (1 HSPs)
chr2 (581-662)||(35411082-35411163)


Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 71 - 792
Target Start/End: Original strand, 37147161 - 37147885
Alignment:
Q  71 atgtaacattcaccggatcctggagctttaaccatcaaagaacctatccagttcttaacaaaaatcctgannnnnnnnn--actaccttaaaaccaacag 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||           |||||||||||||||||||    
T  37147161 atgtaacattcaccggatcctggagctttaaccatcaaagaacctattcagttcttaacaaaaatcctgatttttttttttactaccttaaaaccaacag 37147260  T
Q  169 atttgtcgccggttaaaacccaccattgaaagacatgtgaacgacaaagtccagcttcagccgtcaagaagttggggatgatcaacatttatcaaccacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37147261 atttgtcgccggttaaaacccaccattgaaagacatgtgaacgacaaagtccagcttcagccgtcaagaagttggggatgatcaacatttatcaaccacc 37147360  T
Q  269 aacttgtggggatattgcatcacgcaaataatagagatagaagcaacggccaaggaagatagtgatgacttgcatagcaagtaaactagaaagttagtta 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37147361 aacttgtggggatattgcatcacgcaaataatagagatagaagcaagggccaaggaagatagtgatgacttgcatagcaagtaaactagaaagttagtta 37147460  T
Q  369 ctgatgtaataatcctatggtttaagttagttcaagttagttagcatagcttataaatacttgatgtacaaagctagttacaactaatgataatcatttt 468  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37147461 ctgatgtaataatcctatggtttaagttagttcatgttagttagcatagcttataaatacttgatgtacaaagctagttacaactaatgataatcatttt 37147560  T
Q  469 ttcttcattccttttctactcataatgtttctgactttctgcaannnnnnnatctgagaggtatttatttaaagataatcc-tttgttttgaatatgatt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  37147561 ttcttcattccttttctactcataatgtttctgactttctgcaatttttttatctgagaggtatttatttagagataatccttttgttttgaatatgatt 37147660  T
Q  568 ttgtgtagcaaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatg 667  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37147661 ttgtgtagctaaaggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatg 37147760  T
Q  668 ttgaactcttaattaagagaaatcaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattac 767  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37147761 ttgaactcttaattaagagaaattaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtattctctaatgttcgggtctggctattat 37147860  T
Q  768 ttttttggttacatgttcaggtctg 792  Q
    |||| | ||||||||||||||||||    
T  37147861 ttttatagttacatgttcaggtctg 37147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 37147077 - 37147131
Alignment:
Q  14 atcacaagtcagaaacattgaccacaaatgagaaacccaactcgtaactactcaa 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37147077 atcacaagtcagaaacattgaccacgaatgagaaacccaactcgtaactactcaa 37147131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 588 - 719
Target Start/End: Complemental strand, 7894562 - 7894431
Alignment:
Q  588 aattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaatcaatgttgaactcttaattaagaga 687  Q
    ||||||||||||||||||||||   |||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  7894562 aattgaagaggataaattacaataaatgtttgttggatgaaattgaaaacgaaattgtgaattaattaattaaatcaaagttgaactcttaattaaggga 7894463  T
Q  688 aatcaatagcgattatcaatccattacgaaaa 719  Q
    |||||||||||||||||| || | ||||||||    
T  7894462 aatcaatagcgattatcagtcgaatacgaaaa 7894431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 660
Target Start/End: Complemental strand, 35718220 - 35718141
Alignment:
Q  581 ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaa 660  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||| | ||||| ||||||||||||||    
T  35718220 ggtatgaaattgaagaggacaaattacaaagaatgtttgttggacaaagttgaaaacgacattgtaaattaattaattaa 35718141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 581 - 662
Target Start/End: Original strand, 35411082 - 35411163
Alignment:
Q  581 ggtatgaaattgaagaggataaattacaagggatgtttgttggacgaagttgaaaacaaaattgtgaattaattaattaaat 662  Q
    ||||| ||||| ||||||||||||| ||| | |||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  35411082 ggtataaaattaaagaggataaatttcaatgaatgtttgttggacgaaattcaaaacgaaattgtgaattaattaattaaat 35411163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University