View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18222_low_6 (Length: 325)
Name: NF18222_low_6
Description: NF18222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18222_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 480728 - 480499
Alignment:
| Q |
17 |
atatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggt |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480728 |
atatacaagtatagttgtatcataatgaaaattcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggt |
480629 |
T |
|
| Q |
117 |
ctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480628 |
ctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctgg |
480529 |
T |
|
| Q |
217 |
aacctgatgaaggtataacatgacaaaggt |
246 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
480528 |
aacctgatgaaggtataacatgacagaggt |
480499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 475264 - 475054
Alignment:
| Q |
17 |
atatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggt |
116 |
Q |
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|||||||||||| |||||||||| ||| ||||| || ||||||||||||||| ||||||||||||||| | |||||| || ||||| |||| |||| |
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| T |
475264 |
atatacaagtattgttgtatcatcatggaaaat-atgggcatactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcattaaggt |
475166 |
T |
|
| Q |
117 |
ctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctgg |
216 |
Q |
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||| || | ||||| |||||||| || |||||| ||||| | ||| |||||||||||||||| || ||| || ||||| ||||| |||||||||||||| |
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| T |
475165 |
ctggctctaagaatagtgtgactaatgctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctgg |
475066 |
T |
|
| Q |
217 |
aacctgatgaag |
228 |
Q |
| |
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||||||| |||| |
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| T |
475065 |
aacctgaagaag |
475054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 468691 - 468516
Alignment:
| Q |
47 |
aatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttg |
146 |
Q |
| |
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|||||||||||||| ||||||||| || |||||||||||||| ||| || |||||||| |||| | ||||| || | ||||| |||||||| || || |
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| T |
468691 |
aatcatccacatacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctg |
468592 |
T |
|
| Q |
147 |
attgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
222 |
Q |
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|
| T |
468591 |
attgtaatgttgccatgaaacacatccatgcacaaagtgataagtaattgggatgacttgcataagctggaacctg |
468516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 457556 - 457391
Alignment:
| Q |
57 |
atactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgt |
156 |
Q |
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|||||||||||||| |||| ||||||||||| | |||||| || ||||| |||| ||||||| |||| |||||| || | || || |||||| ||||| |
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| T |
457556 |
atactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgattgtaatgt |
457457 |
T |
|
| Q |
157 |
agacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
222 |
Q |
| |
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|| |||||||||||||| |||| ||||| | ||||||||||||||||| |||||||||||||| |
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|
| T |
457456 |
tgaaattaaacacatccaagctgacaatgatatataattaggatggcttgcgtaagctggaacctg |
457391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 449308 - 449108
Alignment:
| Q |
34 |
tatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataat |
133 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||| ||||||| | ||||| | ||| || |||||||| |||| | || || || | ||||| | |
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| T |
449308 |
tatcatcatgaaaattcatccacatactgcatataaagtgcaaccgagttgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagt |
449209 |
T |
|
| Q |
134 |
gtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaaggtata |
233 |
Q |
| |
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| |||| || |||||| ||||| ||||||| ||||||||| |||| ||||| || ||||||||||||||||| |||| |||||||||| |||| |||| |
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| T |
449208 |
gccactattgatgattgtaatgttgacattatacacatccaggctgacaatgataaataattaggatggcttgcgtaagatggaacctgaggaagatata |
449109 |
T |
|
| Q |
234 |
a |
234 |
Q |
| |
|
| |
|
|
| T |
449108 |
a |
449108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 480485 - 480438
Alignment:
| Q |
264 |
agtaaatagaataactagttttgattacatttatctatcttagaataat |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
480485 |
agtaaatagaataactagttttgattacatttatct-tattagaataat |
480438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 27490010 - 27490212
Alignment:
| Q |
21 |
acaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctga |
120 |
Q |
| |
|
|||||||| || |||||| ||| || ||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||| ||||||| |||| |
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| T |
27490010 |
acaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgc |
27490109 |
T |
|
| Q |
121 |
ttccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacc |
220 |
Q |
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|||| ||||| ||| |||| || |||||| ||||| | ||||||||||||||| |||| || || ||| ||| |||||||||||||| ||||||||| |
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| T |
27490110 |
ctccatgaatagtgtcactagtgatgattgtaatgttgccattaaacacatccaggctgaaagagataaggtatttggatggcttgcatatgctggaacc |
27490209 |
T |
|
| Q |
221 |
tga |
223 |
Q |
| |
|
||| |
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|
| T |
27490210 |
tga |
27490212 |
T |
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