View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_high_11 (Length: 238)
Name: NF18223_high_11
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 51001724 - 51001589
Alignment:
| Q |
1 |
ccaattaaacattcaatttttattttaaaccaaaacaaacctctattggtccacctataagtttatgattcaaccactttagatcctaatcaaacgctac |
100 |
Q |
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| T |
51001724 |
ccaattaaacattcaatttttattttaaaccaaaacaaacctccattggtccacctataagtttataattcaaccactttagatcctaatcaaacgctac |
51001625 |
T |
|
| Q |
101 |
attaaaactattttggcaaaattacataaatagtcc |
136 |
Q |
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| T |
51001624 |
attaaaactattttggcaaaactacataaatagtcc |
51001589 |
T |
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