View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_high_13 (Length: 234)
Name: NF18223_high_13
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48674333 - 48674117
Alignment:
| Q |
1 |
ccattttttcatcaacagtacaactcactaaaagctgttgaatttaagagagagataatgaattttctctttcttaatgcaatgcttctacaacgacaca |
100 |
Q |
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| T |
48674333 |
ccattttttcatcaacagtgt---tcactaaaagctgttgaatt-aagagagagataatgaattttctctttcttaatgcaatgcttctacaacgacaca |
48674238 |
T |
|
| Q |
101 |
ggcactgctgatgatccatacaagcctttccactgcaaccgaggaatcttactggttgccagacacaatctattgaattattgaaattggtctagattat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48674237 |
ggcactgctgatgatccatacaagcctttccattgcaaccgaggaatcttactggttgccagacacaatctattgaattattgaaattggtctagattat |
48674138 |
T |
|
| Q |
201 |
ataattctcaacatcaattat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48674137 |
ataattctcaacatcaattat |
48674117 |
T |
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