View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_high_2 (Length: 496)
Name: NF18223_high_2
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 39230404 - 39229952
Alignment:
| Q |
18 |
acttataaggtcgatggtttgaaataatcacaaaatgatgacttttattcttccgcaaactagaaacatttgcggttcaacataaatagaggtaaaaacg |
117 |
Q |
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| T |
39230404 |
acttataaggtcgatggtttgaaataatcacaaaatgatgacttttattcttccgctaactagaaacatttgcggttcaacataaatagaggtaaaaacg |
39230305 |
T |
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| Q |
118 |
gagtcacatccactcagcaatttcattaaacacgagaacaatttagtgtttcaattattcnnnnnnnnnnnnnnnnnnnctcctccgatcaaatttaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
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| T |
39230304 |
gagtcacatccactcagcaatttcattaaacacgagaacaatttcgtgtttcaattattcttttattttttatctttttctcctccgatcatatttaaaa |
39230205 |
T |
|
| Q |
218 |
aattcttttggcaatcctaataatgataactcgaggtgcacatttttcccaataggcaggtaatagaacaatttaacattagagttgaacaaatactagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230204 |
aattcttttggcaatcctaataatgataactcgaggtgcacatttttcccaataggcaggtaatagaacaatttaacattagagttgaacaaatactagc |
39230105 |
T |
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| Q |
318 |
ttatacttgcttctgaattagaagctactatattataaattctgggaaataccaccttcccatgcaacatcaaagacaacatggaaagaaagaaagnnnn |
417 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230104 |
ttatacttgcttc--aattagaagctactatattataaattctgggaaataccaccttcccatgcaacatcaaagacaacatggaaagaaagaaag-aaa |
39230008 |
T |
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| Q |
418 |
nnnntcacagttgatttacatttcagaatcacaagagttgaagtagaaattaatgt |
473 |
Q |
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| T |
39230007 |
aaaatcacagttgatttacatttcagaatcacaagagttgaagtagaaattaatgt |
39229952 |
T |
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