View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18223_high_3 (Length: 430)
Name: NF18223_high_3
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 25910695 - 25910491
Alignment:
| Q |
17 |
atattcatcatttcacattaaaccatattgtttcaaatggatgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25910695 |
atattcatcatttcacattaaaccatattgtttcaaatggacgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaaca |
25910596 |
T |
|
| Q |
117 |
cagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattggtgtgattagcacgaaaaagttatcgtgctatttagcat |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
25910595 |
cagcataaaaatggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgtgattagcacgaaaatgttatcctgctatttagcat |
25910496 |
T |
|
| Q |
217 |
ttttc |
221 |
Q |
| |
|
||||| |
|
|
| T |
25910495 |
ttttc |
25910491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 38879481 - 38879691
Alignment:
| Q |
17 |
atattcatcatttcacattaaaccatattgtttcaaatggatgaggattgtgc-----attacgagcaaaataaaaatggagaaggggatgtgaagatga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38879481 |
atattcatcatttcacattaaaccatattgtttcaaatggacgaggattgtgcagtgcattacgagcaaaataaaaatggagaaggggatatgaagatga |
38879580 |
T |
|
| Q |
112 |
aaacacagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattggtgtgattagcacgaaaaagttatcgtgctattt |
211 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38879581 |
aaacacagcataaaaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgtgattagcacgaaaaagttatcgtgctattt |
38879680 |
T |
|
| Q |
212 |
agcatttttct |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
38879681 |
agcatttttct |
38879691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 222 - 416
Target Start/End: Complemental strand, 44634183 - 44633992
Alignment:
| Q |
222 |
taaaattaaatatggattcgaagtacatggaaaattaaagtgaggcactattcaatttattttacgaaggcaatattcagtgttctttggcgtttatcac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44634183 |
taaaattaaatatggattcgaagtacatggaaaattaaagtgaggcactattcaatttattttacgaaggcaatattcagcgttctttggcgtttatcac |
44634084 |
T |
|
| Q |
322 |
ccccacatacacgagtttcgcgaggcagactaaaataatactagtacctttgttagttggaaaaaggaattttttaacttgtatctttacctatg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
44634083 |
ccccacatacacgagtttcgcgaggcagactaaaataa---tagtacctttgttagttggaaaaaataattttttaagttgtatctttgcctatg |
44633992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University