View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18223_high_9 (Length: 253)
Name: NF18223_high_9
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 29455321 - 29455084
Alignment:
| Q |
18 |
atatttacattgctaaagaaaagtaaacagaaagaatttgtgggcttccttcnnnnnnnnnnn-------gaattcgtgggctgtaggcatgtggcagat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
29455321 |
atatttacattgctaaagaaaagtaaacagaaagaattcgtgggcttccttcaaaaaaaaaaaaaaaagagaattcgtgggatgttggcatgtggcagat |
29455222 |
T |
|
| Q |
111 |
taaagtaaagtagtgtcgatttgcagctacaatacaatataagctttttgtttagggcttcatcacgatttacaacgccgcaa-----ctcactgata-- |
203 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
29455221 |
taaagtaaagtagtgtcgatttgcacct-caatacaatataagctttttgtttagggcttcatcacgatttacaacgccgcaactcaactcactgctatc |
29455123 |
T |
|
| Q |
204 |
--tcacatggatatccaaacagccaagaagaataggcct |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29455122 |
actcacatggatatccaaacagccaagaagaataggcct |
29455084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University