View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_1 (Length: 852)
Name: NF18223_low_1
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_1 |
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| [»] scaffold0125 (3 HSPs) |
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Alignment Details
Target: scaffold0125 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 314 - 841
Target Start/End: Original strand, 4885 - 5424
Alignment:
| Q |
314 |
aagttttctaccatgaaaagggaggtcgttgtcttccaataatagccttttcttgttctctaatgaatgaaattggtgattaagaagtgctcttgtcttt |
413 |
Q |
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| T |
4885 |
aagttttctaccatgaaaagggaggtcgctgtcttccaataatagtcttttcttgttctctaatgaatgaaattggtgattaagaagtgctcttgtcttt |
4984 |
T |
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| Q |
414 |
gtatgctctaagccattcttctcattttccacattagtggaggaacttggcaaacaaagggacaataacaggaacgtaatgagggaagcacgcagcatta |
513 |
Q |
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| T |
4985 |
gtatgctctaagcttttcttctcattttccacgttagtggaggaacttggaaaacaaagggacaataacaggaacgtaatgagggaagcacgcagcaata |
5084 |
T |
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| Q |
514 |
tgtaaattgtggtttgtgtcattttgtatactattagg----ttaatatgtcttatgttctagctagctttcctttat---atgtactttcaacgtttga |
606 |
Q |
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| T |
5085 |
tgtaaattgaggtttgtgtcattttgtatactattaggttaattaatatgttttatgttctagctagctttcctttatataatgtactttcaacgtttga |
5184 |
T |
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| Q |
607 |
cgcaaccacacaatttgttttctcgtatgtttctcctttgacttagtattcacccatggtcat-cgagacttatggcataatatgttcct---ttcttct |
702 |
Q |
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| T |
5185 |
cgcaaccacacaatttgttttctcgtatgtttctcctttgacttagtattcacccatgttcatccgacacttatggcataatatgttcctttcttcttct |
5284 |
T |
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| Q |
703 |
tcttttttattcggtgcactcttatact-gnnnnnnnccttatttaaaaaattcaaatcatttcttatacttcttttggggataaatcggtcataataag |
801 |
Q |
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| T |
5285 |
tcttttttattcggtgcactcttatactaaaaaaaaaccttatttaaaaaattcaaatcatttcttatacttcttttggggataaatcggtcataataag |
5384 |
T |
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| Q |
802 |
aatttattcttatattctttatcatatttcctcttttcat |
841 |
Q |
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| T |
5385 |
aatttattcttatattctttatcatatttcctcttttcat |
5424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 4741 - 4854
Alignment:
| Q |
173 |
agtaatgatatagtttattaattatactaggaggaaagaaacgaaaagcgaaatgcaaaatattgaggtagctcggaacatggacattccagtttgattc |
272 |
Q |
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| T |
4741 |
agtaatgatatagttta---attatactaggatgaaagaaacgaaaagcgaaatgcaaaatattgaggtagctcggaacatggacattccagtttgattc |
4837 |
T |
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| Q |
273 |
gccgatgatttcccata |
289 |
Q |
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| T |
4838 |
gccgatgatttcccata |
4854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 4592 - 4706
Alignment:
| Q |
19 |
attcattataaaagaatatgttacaatcgaatcccagatacaaaattcaacaaaacattattcataaaatatgtgcagcatgcacgatacgtacccagaa |
118 |
Q |
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| T |
4592 |
attcattataaacgaatatgttacaatcgaatcgcagatacaaaattcaac-aaacattattcataaaatatgtgcagcatgcacga----tacccagaa |
4686 |
T |
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| Q |
119 |
aaattattcatgtgattttt |
138 |
Q |
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| T |
4687 |
aaattattcatgtaattttt |
4706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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