View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18223_low_10 (Length: 362)
Name: NF18223_low_10
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 5229618 - 5229961
Alignment:
| Q |
1 |
atgttgttaatctttcaaagtcttatcttaattcttaaccagcaaagatgttaatttttcaagtcttgtcttaactcttaactaccatcattggcatagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5229618 |
atgttgttaatctttcaaagtcttatcttaattcttaaccacaaaagatgttaatctttcaagtcttgtcttaactcttaactaccatcattggcatagt |
5229717 |
T |
|
| Q |
101 |
ttaatcacaactaatgaaccaaacatatatactatatatgctttaacttcactcctactcnnnnnnnnnnnnnnnnnnnntcattaaaccctctcaacaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5229718 |
ttaatcacaaccaatgaaccaaacatatatactatatatgctttaacttcactcctactcaaaaaataaaaaaataaaa-tcattaaaccctctcaacaa |
5229816 |
T |
|
| Q |
201 |
ttttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcagaaacaatgaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5229817 |
ttttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcagaaacaatgaagct |
5229916 |
T |
|
| Q |
301 |
tcttaggaaaaagctttctcttccaatcattattaccacaatctg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5229917 |
tcttaggaaaaagctttctcttccaatcattattaccacaatctg |
5229961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University