View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_13 (Length: 318)
Name: NF18223_low_13
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 24830979 - 24831263
Alignment:
| Q |
14 |
atgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatatagatccatggaatgaagctgagcct |
113 |
Q |
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| T |
24830979 |
atgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagagacatccaattcgtatcatatagatccatggaatgaagctgagcct |
24831078 |
T |
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| Q |
114 |
taccctttctactagcgaatcggaacaaccattgaatgagagacaattttttcccccacagctgtatctgtatcatatgacatttgattttttcattgtc |
213 |
Q |
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| T |
24831079 |
taccctttctactagcgaatcggaacaaccattgaatgagagacaatttttttccccacagctgtatctgtatcatatgacatttgattttttcattgtc |
24831178 |
T |
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| Q |
214 |
atgtccattggaagattcttcattaaatnnnnnnnnnncttgcatcaaacatgtccaacaaaataataagtggctacacttttatg |
299 |
Q |
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| T |
24831179 |
atgtccattggaagattcttcattaaat-aaaaaaaaacttgcatcaaacatgtccaacaaaataataagtggctacgcttttatg |
24831263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 814968 - 815036
Alignment:
| Q |
89 |
agatccatggaatgaagctgagccttaccctttctactagcgaatcggaacaaccattgaatgagagac |
157 |
Q |
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| T |
814968 |
agatccatgaaatgaaggtgagccttaccgtttctactagcgaatctgcacaaccattgaatgggagac |
815036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 16947403 - 16947436
Alignment:
| Q |
256 |
catcaaacatgtccaacaaaataataagtggcta |
289 |
Q |
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| T |
16947403 |
catcaaacatgtccaacaaaataataagtggcta |
16947436 |
T |
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