View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18223_low_14 (Length: 299)

Name: NF18223_low_14
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18223_low_14
NF18223_low_14
[»] chr6 (6 HSPs)
chr6 (68-191)||(32960957-32961071)
chr6 (189-270)||(32960852-32960933)
chr6 (17-67)||(32950357-32950407)
chr6 (98-188)||(32745084-32745174)
chr6 (100-188)||(29137042-29137130)
chr6 (98-188)||(29123885-29123975)
[»] chr7 (1 HSPs)
chr7 (230-278)||(7793739-7793787)
[»] scaffold0054 (1 HSPs)
scaffold0054 (189-252)||(39955-40015)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 32961071 - 32960957
Alignment:
Q  68 ttgacatgccaccttctttaaaatggtccaagggcacccatctttacatggatggcgtgtgtcattggttgtgtaagaaaagttatggattttcagaaaa 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||         |||    
T  32961071 ttgacatgccaccttctttaaaatggtccgagggcacccatctctacatggatggtgtgtgtcattggttgtgtaagaaaagttatgg---------aaa 32960981  T
Q  168 acataatagcccatttcaaccatg 191  Q
    ||||||||||||||||||||||||    
T  32960980 acataatagcccatttcaaccatg 32960957  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 32960933 - 32960852
Alignment:
Q  189 atgaggtgttccttgtaacacccatacactcagatgaagatgatgattgttttaaatttaaagcatcgtggataaacttggc 270  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  32960933 atgaggtgttccttgtaacacccatacactcggatgaagatgatgattgtattaaatttaaagcatcatggataaacttggc 32960852  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32950407 - 32950357
Alignment:
Q  17 tgtttttcagtgggaacaatttggcatgttgcatatcatataaagagtttc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950407 tgtttttcagtgggaacaatttggcatgttgcatatcatataaagagtttc 32950357  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 32745174 - 32745084
Alignment:
Q  98 agggcacccatctttacatggatggcgtgtgtcattggttgtgtaagaaaagttatggattttcagaaaaacataatagcccatttcaacc 188  Q
    |||||| |||| | ||||||||||| |||||||||||||||||| ||||   |||||||| ||   |||||||||||| ||||||||||||    
T  32745174 agggcaaccatgtctacatggatggagtgtgtcattggttgtgtcagaatgattatggatattggaaaaaacataatatcccatttcaacc 32745084  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 29137042 - 29137130
Alignment:
Q  100 ggcacccatctttacatggatggcgtgtgtcattggttgtgtaagaaaagttatggattttcagaaaaacataatagcccatttcaacc 188  Q
    ||||||||| | ||||||||||| |||||||||||||||||| ||||   |||||||| ||   |||||||||||| | ||||||||||    
T  29137042 ggcacccatgtctacatggatggagtgtgtcattggttgtgtcagaatgattatggatattggaaaaaacataatatcgcatttcaacc 29137130  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 29123885 - 29123975
Alignment:
Q  98 agggcacccatctttacatggatggcgtgtgtcattggttgtgtaagaaaagttatggattttcagaaaaacataatagcccatttcaacc 188  Q
    |||||| |||| | ||||||||||| |||||||||||||||||| ||||   ||||||||  |   |||||||||||| | ||||||||||    
T  29123885 agggcaaccatgtctacatggatggagtgtgtcattggttgtgtcagaaggattatggatactggaaaaaacataatatctcatttcaacc 29123975  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 7793739 - 7793787
Alignment:
Q  230 gatgattgttttaaatttaaagcatcgtggataaacttggcagtgttaa 278  Q
    ||||||||||||||||||||||| ||||||||||| ||||  |||||||    
T  7793739 gatgattgttttaaatttaaagcttcgtggataaatttggtggtgttaa 7793787  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 40015 - 39955
Alignment:
Q  189 atgaggtgttccttgtaacacccatacactcagatgaagatgatgattgttttaaatttaaagc 252  Q
    |||||||||||  | |||||||||||| ||| ||||||||   |||||||||||||||||||||    
T  40015 atgaggtgttctgtataacacccataccctcggatgaaga---tgattgttttaaatttaaagc 39955  T

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