View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_16 (Length: 253)
Name: NF18223_low_16
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 29455321 - 29455084
Alignment:
| Q |
18 |
atatttacattgctaaagaaaagtaaacagaaagaatttgtgggcttccttcnnnnnnnnnnn-------gaattcgtgggctgtaggcatgtggcagat |
110 |
Q |
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| T |
29455321 |
atatttacattgctaaagaaaagtaaacagaaagaattcgtgggcttccttcaaaaaaaaaaaaaaaagagaattcgtgggatgttggcatgtggcagat |
29455222 |
T |
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| Q |
111 |
taaagtaaagtagtgtcgatttgcagctacaatacaatataagctttttgtttagggcttcatcacgatttacaacgccgcaa-----ctcactgata-- |
203 |
Q |
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| T |
29455221 |
taaagtaaagtagtgtcgatttgcacct-caatacaatataagctttttgtttagggcttcatcacgatttacaacgccgcaactcaactcactgctatc |
29455123 |
T |
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| Q |
204 |
--tcacatggatatccaaacagccaagaagaataggcct |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
29455122 |
actcacatggatatccaaacagccaagaagaataggcct |
29455084 |
T |
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