View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_17 (Length: 249)
Name: NF18223_low_17
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 51002052 - 51001816
Alignment:
| Q |
14 |
gaatgcatgtagcctgcgtgaaaggtctgtaataaattagtcatcgattattttaatatatcatcgactgaaagatgtgtgaaagtttaacagtgtaggt |
113 |
Q |
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| T |
51002052 |
gaatgcatgtagcctccgtgaaaggtctgtaataaattagtcatcggttattttaatatatcatcgactgaaagatgtgtgaaagtttaacagtgtaggt |
51001953 |
T |
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| Q |
114 |
atataaatgtcaatttcactttgtat-nnnnnnnnntcaactatatacaagcatatgatatgtattttatctgtgtcaaacttgagtaaaacaagaagtg |
212 |
Q |
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| T |
51001952 |
atataaatgtcaatttcactttgtataaaaaaaacatcaactatatacaagcatatgatatgtattttatctgtgtcaaacttgagtaaaacaagaagtg |
51001853 |
T |
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| Q |
213 |
aatcaacacatttgaatgtgagagagaaaagagtgaa |
249 |
Q |
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|||| |||||||||||||||||||| |||| |||||| |
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| T |
51001852 |
aatcgacacatttgaatgtgagagaaaaaaaagtgaa |
51001816 |
T |
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