View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_18 (Length: 239)
Name: NF18223_low_18
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_18 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 8893920 - 8894129
Alignment:
| Q |
12 |
cagagaaactcaattacaacgaatttctaatgttgtgactcattccatcaagcgtactcattatctcaatcatgtgttttctcattcacataatgacttg |
111 |
Q |
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| T |
8893920 |
cagagaaactcaattacaacgaatttctaatgttgtgactcattccatcaagcgtgctcattatctcaatcatgtgttttctctttcacataatgacttg |
8894019 |
T |
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| Q |
112 |
ccaaaacccactataataccgtatgcgggttcctattatgccatgagttattcaattggtactccaccatttcagctttatggtgttgtagatacaggta |
211 |
Q |
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| T |
8894020 |
ccaaaacccactataataccctatgcaggttcctattatgtcatgagttattcaattggtacccctccatttcagctttatggtgttgtggatacaggca |
8894119 |
T |
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| Q |
212 |
gtgacggaat |
221 |
Q |
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| T |
8894120 |
gtgacggaat |
8894129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 15787 - 15569
Alignment:
| Q |
10 |
agcagagaaactcaattacaacgaatttctaatgttgtgactcattccatcaagcgtactcattatctcaatcatgtgttttctcattcacataatgact |
109 |
Q |
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| T |
15787 |
agcaaagaagctcaaatacaacgagtttcaagtgtcataaatcattccattaatcgtgcccattacctcaatcatgtcctttctttttcacgtaatgaca |
15688 |
T |
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| Q |
110 |
tgccaaaacccactataataccgtatgc------gggttcctattatgccatgagttattcaattggtactccaccatttcagctttatggtgttgtaga |
203 |
Q |
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| T |
15687 |
tgccaaaacccactataatagcacatgattatatgggtccatattatgtcatgagttattcaatcggtactccaccattccagctttatggtgctatgga |
15588 |
T |
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| Q |
204 |
tacaggtagtgacggaatt |
222 |
Q |
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| T |
15587 |
tacaggtagtgatggaatt |
15569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 14200717 - 14200780
Alignment:
| Q |
153 |
catgagttattcaattggtactccaccatttcagctttatggtgttgtagatacaggtagtgac |
216 |
Q |
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| T |
14200717 |
catgagttattcaattggtactccaccatttaaggtatttggctttgttgatacaggtagtgac |
14200780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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