View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18223_low_2 (Length: 707)
Name: NF18223_low_2
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 335 - 689
Target Start/End: Original strand, 41921480 - 41921834
Alignment:
| Q |
335 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcattttt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41921480 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttgctactttatatgccaagacttatgcattttt |
41921579 |
T |
|
| Q |
435 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
534 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921580 |
ccttaatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
41921679 |
T |
|
| Q |
535 |
ttatatatgttcatatttctaacttttgtttatagtatcctccacgagaacatgatgatccatccccttatcttctggttgtatggcaaccaggtactcc |
634 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41921680 |
ttatattagttcatatttctaacttttgtttatagtatccttcacgagaacatgatgatccatccccttatcttctggttgtatggcgaccaggtactcc |
41921779 |
T |
|
| Q |
635 |
ttctttgtttataatcattaattagtagagttagttatgtttatgttgagaaaaa |
689 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41921780 |
ttctgtgtttataatcattaattagtagagttggttatgtttatgttgagaaaaa |
41921834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 88 - 283
Target Start/End: Original strand, 41921273 - 41921468
Alignment:
| Q |
88 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921273 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
41921372 |
T |
|
| Q |
188 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41921373 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 41921154 - 41921239
Alignment:
| Q |
2 |
tattgagagcgatgaagaagatattgaggatattccaacatttaacctcagtagtcaagaatcatcatcatcatgcctgccaatgtatg |
90 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
41921154 |
tattgagagtgatgaagaagatattgaggatattccaacatttaacatcagtagtcaagaatca---tcatcatgtctgccaatgtatg |
41921239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 361 - 634
Target Start/End: Original strand, 1698822 - 1699112
Alignment:
| Q |
361 |
ttttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttt--tcctttatctgttcagttatgtcct |
458 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
1698822 |
ttttaacaacatgtagatatttcaaatttaaataaattacttactacttcatatgctaagac--atgcatttttttcctttatctattcagttatgtcct |
1698919 |
T |
|
| Q |
459 |
cacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaagttatatat---------------- |
542 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| | || || ||||||||||||||||||| |
|
|
| T |
1698920 |
cacggataatcatcctctcctaactgaggtaggtatcaaaataatcacgaagtaaattgttatacacacatgaaagttatatatatatatatatatatac |
1699019 |
T |
|
| Q |
543 |
gttcatatttct-aacttttgtttatagtatcctccacgagaacatgatgatccatccccttatcttctggttgtatggcaaccaggtactcc |
634 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1699020 |
attcatatttctcgttttttttttacagtatcctccacgagaacatgatgatccttccccttatcttctggttatatggctaccaggtactcc |
1699112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 1695370 - 1695489
Alignment:
| Q |
98 |
atctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgtaagtttctcac |
197 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
1695370 |
atctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcac |
1695469 |
T |
|
| Q |
198 |
tttcctatattcttatgtta |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1695470 |
tttcctatattcttatgtta |
1695489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 36000637 - 36000744
Alignment:
| Q |
435 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
534 |
Q |
| |
|
||||||| ||||||||||||| || | ||||||||||||||| |||| ||||||| || |||||||||||||||||| |||| || |||||| ||| |
|
|
| T |
36000637 |
cctttatttgttcagttatgttcttaaggataatcaccctctcctagttgaggtaagtcccaaaataatcacaaagtacactttaatacacacatcaaaa |
36000736 |
T |
|
| Q |
535 |
ttatatat |
542 |
Q |
| |
|
|||||||| |
|
|
| T |
36000737 |
ttatatat |
36000744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 634
Target Start/End: Original strand, 36000751 - 36000795
Alignment:
| Q |
590 |
tgatccatccccttatcttctggttgtatggcaaccaggtactcc |
634 |
Q |
| |
|
||||||||||||||||||| || || |||||| |||||||||||| |
|
|
| T |
36000751 |
tgatccatccccttatcttttgattatatggctaccaggtactcc |
36000795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 372 - 506
Target Start/End: Original strand, 1309963 - 1310097
Alignment:
| Q |
372 |
aatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttttcctttatctgttcagttatgtcctcacggataatcac |
471 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| || |||| | | |||| ||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
1309963 |
aatagatatttcaaatttaaagaagttacttactactttgcatgctaatccttacgtaattttgttttatctattcagttatgtcctaacggatgatcac |
1310062 |
T |
|
| Q |
472 |
cctcttctagctgaggtaggtgtcaaaataatcac |
506 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| |
|
|
| T |
1310063 |
cctctcctagtcaaggtaggtagcaaaataatcac |
1310097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 634
Target Start/End: Complemental strand, 1207759 - 1207697
Alignment:
| Q |
572 |
tcctccacgagaacatgatgatccatccccttatcttctggttgtatggcaaccaggtactcc |
634 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
1207759 |
tcctccacgagatgatgttgatccttccccttatcttctgcttgtatggctatcaggtactcc |
1207697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University