View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_20 (Length: 235)
Name: NF18223_low_20
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 44623045 - 44622849
Alignment:
| Q |
19 |
gtttaattatagatgctattacatattgaaacaagaaaatttgcatatagataatagagtaaagctgtgagtaattagtaacatagtctaactaacatga |
118 |
Q |
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| T |
44623045 |
gtttaattatagatgctattacatattgaaacaagaaaatttgcatatagataatagagtaaagctgtgagtaattagtaacatagtctaactaacatg- |
44622947 |
T |
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| Q |
119 |
aatcacaacttgaaatagaaataacaaaggaag---nnnnnnngagtgtaaagagcataccaaataagctctttcagaaaaactcttgtttttgtctcac |
215 |
Q |
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| T |
44622946 |
------------aaatagaaataacaaaggaagaaagaaaaaaaagtgtaaagagcataccaaataagctctttcagaaaaactcttgtttttgtctcac |
44622859 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 44952640 - 44952687
Alignment:
| Q |
168 |
gagcataccaaataagctctttcagaaaaactcttgtttttgtctcac |
215 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
44952640 |
gagcatacctaataagctctttcagaaaaactcttctttttgtctcac |
44952687 |
T |
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