View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_3 (Length: 595)
Name: NF18223_low_3
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 579
Target Start/End: Complemental strand, 9424397 - 9423834
Alignment:
| Q |
13 |
cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424397 |
cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc |
9424298 |
T |
|
| Q |
113 |
aagaagatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaata |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424297 |
aagaagatgtatccgtataatacatattcacattgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaaac |
9424198 |
T |
|
| Q |
213 |
ataagaggtggaagataaatcaattccatcgtaagaacttgatcgaagtaagctgtattcgtatgaattagtatctttttgggtaaaattgttgctgtat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||| ||| |||| |
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| T |
9424197 |
ataagaggtggaagataaatcaattccatcgtaagaacttgatcgaagtaagctgtattcgtatgaattagta---taataagtgaaattggtgcggtat |
9424101 |
T |
|
| Q |
313 |
aagaagaagtgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatatt |
412 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9424100 |
aagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattattgtaattgattgattgcacaaaatatt |
9424001 |
T |
|
| Q |
413 |
cagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatg |
512 |
Q |
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| T |
9424000 |
cagcatcaaacagcttcaatactgtaacgttgtttacgcaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatg |
9423901 |
T |
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| Q |
513 |
agttatgttagaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
579 |
Q |
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| T |
9423900 |
atttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
9423834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 253 - 579
Target Start/End: Complemental strand, 9444393 - 9444067
Alignment:
| Q |
253 |
gatcgaagtaagctgtattcgtatgaattagtatctttttgggtaaaattgttgctgtataagaagaagtgagggagagaggagcaattgttgggttgaa |
352 |
Q |
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|||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
9444393 |
gatcgacggaagctgtatttgtatgaattagtatctttttgggtaaaattgtttctgtataagaagaagtgagggagagaggagcagttggtaggttgaa |
9444294 |
T |
|
| Q |
353 |
tattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagaca |
452 |
Q |
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| T |
9444293 |
tgtttgggtcaacaactcgtattgtgtaattgttgtaattgattgattgcaccaaatattcagcatcatacagcttcaatactgtaacgttgtttagaca |
9444194 |
T |
|
| Q |
453 |
attcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggatgagttatgttagaaatttttccacaggaagaagaacaaggt |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
9444193 |
attcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatggataagttatgttggaaatttttccacaggaagaagaacaaggt |
9444094 |
T |
|
| Q |
553 |
tgtgaataagttttgtgtggaagtaga |
579 |
Q |
| |
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| T |
9444093 |
tgtgaataagttttgtgtggaagtaga |
9444067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 298 - 498
Target Start/End: Original strand, 9417905 - 9418105
Alignment:
| Q |
298 |
aaattgttgctgtataagaagaagtgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattg |
397 |
Q |
| |
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|||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9417905 |
aaattggtgcggtatatgaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattcttgtaattgattg |
9418004 |
T |
|
| Q |
398 |
attgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
497 |
Q |
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| T |
9418005 |
attgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttt |
9418104 |
T |
|
| Q |
498 |
t |
498 |
Q |
| |
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| |
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| T |
9418105 |
t |
9418105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 9444606 - 9444408
Alignment:
| Q |
13 |
cagaaggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||| |||||| | ||| || |
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| T |
9444606 |
cagaaggatgtgagagtaacaagcttaacacggcattgaggctgcaatattccaagttgtgggtccccgacaataacatat---gtgtgttcatccaggc |
9444510 |
T |
|
| Q |
113 |
aagaagatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatcaattccatcgaaata |
212 |
Q |
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| |||| ||||||||||||||| ||| ||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||| |||| |
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| T |
9444509 |
atgaagttgtatccgtataatatttatccacaacgttactaggtggacttgtacacttcaggtaaattacaggcctggataaatcaattctatcggaata |
9444410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 9417627 - 9417804
Alignment:
| Q |
17 |
aggatgtgagagtaacaagcttaacacgacattgaggctccaatattccaagttgtgggtccccaacaatagcatatatgttgtgttgacccatgcaaga |
116 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||| ||||| ||| |||||| ||| ||| || |
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| T |
9417627 |
aggatgtgagagtaacaagctcaacacggcattgaggctgcaatattccaaagtgtggatccccaacaataacatat--gtt-tgttgatccaggcatga |
9417723 |
T |
|
| Q |
117 |
agatgtatccgtataatacatattcacgttgttactaggtggacttgtacagttcatgtaaattacaggcctagataaatc |
197 |
Q |
| |
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|| |||||||| ||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
9417724 |
agctgtatccgcataatacatattcacatcattactaggtggacttgtacacttcaggtaaattacaggccaagataaatc |
9417804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 9418102 - 9418154
Alignment:
| Q |
527 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
579 |
Q |
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| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtaga |
9418154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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