View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18223_low_7 (Length: 455)
Name: NF18223_low_7
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 8139783 - 8139361
Alignment:
| Q |
1 |
tgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatataccggatatttaacaacactgatattgatttgtttcagcaataaagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8139783 |
tgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatacaccggatatttaataacactgatattgatttgtttcagcaataaagaga |
8139684 |
T |
|
| Q |
101 |
aaaggacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttcttgccatgatgttccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139683 |
aaaggacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttcttgccatgatgttccca |
8139584 |
T |
|
| Q |
201 |
gagagcgacgac--ctgttagaacaatcagagttaaaactcatttatggttgtgagtgaatatgtgaattccataaagttttgattttgaaggttacctg |
298 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139583 |
gagagcgacgaccactgttagaacaatcagagttaaaactcatttatggttgtgagtgaatatgtgaattccataaagttttgattttgaaggttacctg |
8139484 |
T |
|
| Q |
299 |
ttcaatgagcatagggctcccaccagaaaagagtacggtcgaaaggcatgagagaagatgtcaaattacacacaagaaacattagtaaatgatcaagact |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
8139483 |
ttcaatgagcatagggctcccaccagaaaagagtacggtcgaaaggcatgagag-------------------aagaaacattactaaatgatcaagact |
8139403 |
T |
|
| Q |
399 |
catacaagagcagagacatcgttccaaaaacagtgatattca |
440 |
Q |
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| T |
8139402 |
catacaagagcagagacatcattccaaaaacagtgatattca |
8139361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 105 - 311
Target Start/End: Original strand, 7499018 - 7499230
Alignment:
| Q |
105 |
gacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttcttgccatgatgttccca---- |
200 |
Q |
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|||||| |||||||||||||| |||||||||||| |||||| ||||| || ||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
7499018 |
gacctctttagtttaccaatttttttccatgacattagatgccactttacccacccggaactttcttctgcacttgttcttgccatgatattcccacaca |
7499117 |
T |
|
| Q |
201 |
----gagagcgacgacc--tgttagaacaatcagagttaaaactcatttatggttgtgagtgaatatgtgaattccataaagttttgattttgaaggtta |
294 |
Q |
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||||||||||||| |||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7499118 |
atcagagagcgacgaccactgttagaacaatcagaataaaaactcgtttatggttgtga----atatgtgaattccataaagttttgattttgaaggtta |
7499213 |
T |
|
| Q |
295 |
cctgttcaatgagcata |
311 |
Q |
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|||||||| | |||||| |
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| T |
7499214 |
cctgttcatttagcata |
7499230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 7499460 - 7499563
Alignment:
| Q |
337 |
tcgaaaggcatgagagaagatgtcaaattacacacaagaaacattagtaaatgatcaagactcatacaagagcagagacatcgttccaaaaacagtgata |
436 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
7499460 |
tcgaaaggcgtgagagaagatgtcaaattacacacaagaaacattactacatgatcaagactcataaaagagcagaaacatcattccaaaaacagtgatg |
7499559 |
T |
|
| Q |
437 |
ttca |
440 |
Q |
| |
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|||| |
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|
| T |
7499560 |
ttca |
7499563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 7502223 - 7502297
Alignment:
| Q |
258 |
atatgtgaattccataaagttttgattttgaaggttacctgttcaatgagcatagggctcccaccagaaaagagt |
332 |
Q |
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|||||||||||| |||||||| ||||||||||| |||||| ||||||| |||||||| | |||||||||||||| |
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| T |
7502223 |
atatgtgaattcaataaagttctgattttgaagtttacctcttcaatgcacatagggccctcaccagaaaagagt |
7502297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 7502081 - 7502172
Alignment:
| Q |
95 |
aagagaaaaggacctcgttagtttaccaattatttt-ccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttctt |
185 |
Q |
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|||| ||| ||| ||| |||||||||||||| |||| ||||||||||||| || |||||||| ||| || ||||||||||||||||||||| |
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| T |
7502081 |
aagaaaaagggaactctttagtttaccaattttttttccatgacactagacgtcactttccccgcctggtgcttgcttctgcacttgttctt |
7502172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9130157 - 9130084
Alignment:
| Q |
1 |
tgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatataccggatatttaacaacactgat |
74 |
Q |
| |
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|||||||||||| |||| ||||| |||||||||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
9130157 |
tgtatcgtctaccctaacttccgatacggaagagcagtatagcgctgatatgccggatatttaacaacactgat |
9130084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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