View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18223_low_9 (Length: 411)
Name: NF18223_low_9
Description: NF18223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18223_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 7353555 - 7353154
Alignment:
| Q |
1 |
tatagtaggcttttgtatcataggcatttatgttgtagattatgtatgaaactggtttcctctttaaggatcccattggttcatgttccatttgtttatg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
7353555 |
tatagtaggtttttgtatcataggcatttatgttgtagattatgtatgaaactggtttcctctttagggatcccattggttgatgttccatttgtttatg |
7353456 |
T |
|
| Q |
101 |
tcttttaagatgccttgaggtttttattcttagtgaaatgataatcaatttataccgttttcatgggataggttcagaac-nnnnnnnnnnngagttgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
7353455 |
tcttttaagatgccttgaggtttttattcttagtgaaatgataatcaatttataccgttttcatgggataggttcagaacaaaaaaaaaaaagagtcgtt |
7353356 |
T |
|
| Q |
200 |
catgtagaccaagctttcatgacaagaaaactattctttaggcttccgatattactctccggcagcc--nnnnnnntcaaaataccccgaacgaccgcta |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7353355 |
catgtagaccaagctttcatgacaagaaaactattctttaggcttccgatattactctccggcagccaaaaaaaaatcaaaataccccgaacgaccgcta |
7353256 |
T |
|
| Q |
298 |
gaaagactagtctgaaatcattgnnnnnnnnctgctaaaagatttctacactcattgacgtcaagaaacatgtattgtttgatttttctaccatattctt |
397 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7353255 |
gaaagactagtctgaaatcattgaaaaaagactgctaaaagatttctacactcattgacgtcaagaaacatgtattgtttgatttttctaccatattttt |
7353156 |
T |
|
| Q |
398 |
cg |
399 |
Q |
| |
|
|| |
|
|
| T |
7353155 |
cg |
7353154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 13853588 - 13853423
Alignment:
| Q |
11 |
ttttgtatcataggcatttatgttgtagattatgtatgaaactggtttcctctttaaggatcccattggttcatgt-----tccatttgtttatgtcttt |
105 |
Q |
| |
|
||||||| ||||| ||| |||| || ||||||||||||||||||||||||||| | |||||||| ||||| | || ||||||||| ||| |||| |
|
|
| T |
13853588 |
ttttgtagcatagacatatatgccgttgattatgtatgaaactggtttcctcttcagggatcccagtggttgacgtgacgatccatttgtacatgacttt |
13853489 |
T |
|
| Q |
106 |
taagatgccttgaggtttttattcttagt------gaaatgataatcaatttataccgttttcatgg |
166 |
Q |
| |
|
|| ||||||||||| || |||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
13853488 |
tacaatgccttgagg-ttatattcttagttatggagaaatgataatcaatctataccattttcatgg |
13853423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University