View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_high_1 (Length: 634)
Name: NF18224_high_1
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_high_1 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Original strand, 9496145 - 9496771
Alignment:
| Q |
1 |
tgcttcggattcggtaactcga----gcgcagttcctaatataaaatacctcgtccgacactttaatatgaatcttctcttcttaagcaaaacattagtt |
96 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496145 |
tgcttcgggttcggtaactcgatcgagcgcagttcctaatataaaatacctcgtccgacactttaatatgaatcttctcttcttaagcaaaacattagtt |
9496244 |
T |
|
| Q |
97 |
caaatgaataa--ttgaagatttacattatgtgctcgactttgatgcttatttttctgttgaccgtaccgatagaggggacaatcttgctttgtttttgc |
194 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496245 |
caaatgaataagattgaagatttacattatgtgctcgactttgattcttatttttctgttgaccgtaccgatagaggggacaatcttgctttgtttttgc |
9496344 |
T |
|
| Q |
195 |
gtactacttttaattgtcaaattgtcaatttctctaataatcatggtaatgttgatattgttgatactacttctgtttgtggaaacttaccagctactag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496345 |
gtactacttttaattgtcaaattgtcaatttctctaataatcatggtaatgttgatattgttgatactacttctgtttgtggaaacttaccagctactac |
9496444 |
T |
|
| Q |
295 |
ggttaccctaat--gggacataggcgagctgcgtgggatttccttcttcgattgtatagtcaaattaatgccccttggtgtatttttggtgatttcaatg |
392 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496445 |
ggttaccctaatgggggacataggcgagctacgtgggatttccttcttcgattgtatagtcaaattaatgccccttggtgtatttttggtgatttcaatg |
9496544 |
T |
|
| Q |
393 |
atattttggatgcaaattggttaattaatggttttagacaagctgtccttgattttggattatctgacgtaccagttgatggctatccttttacatactt |
492 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
9496545 |
atattttggatgcaaattgg-taattaatggttttagacaagctgtccttgattttggattatctgatgtaccagttgatggctatcattttacatactt |
9496643 |
T |
|
| Q |
493 |
gaaaagtctaggcacaccacatgcagttgaggaaagattagatatagcttagcaaataattcatggtttaataatttttcagatgtgaagctcaaaaatc |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
9496644 |
taaaagtctaggcacaccacatgcagttgaggaaagattagatatagcttagcaaataattcatggtttaataatttttcagaagtgaggctcaaaaatc |
9496743 |
T |
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| Q |
593 |
ttgtagctcccgcatcggatcattactc |
620 |
Q |
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| T |
9496744 |
ttgtagctcccgcatcggatcattactc |
9496771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 17246184 - 17246144
Alignment:
| Q |
367 |
ttggtgtatttttggtgatttcaatgatattttggatgcaa |
407 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||| |
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| T |
17246184 |
ttggtgtatttttggggatttcaatgatatcctggatgcaa |
17246144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 4326 - 4368
Alignment:
| Q |
365 |
ccttggtgtatttttggtgatttcaatgatattttggatgcaa |
407 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
4326 |
ccttggtgtatttttggtgacttcaacgatattttggatgcaa |
4368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 41328767 - 41328806
Alignment:
| Q |
368 |
tggtgtatttttggtgatttcaatgatattttggatgcaa |
407 |
Q |
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| T |
41328767 |
tggtgtatttttggcgattttaatgatattttggatgcaa |
41328806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 20926680 - 20926718
Alignment:
| Q |
369 |
ggtgtatttttggtgatttcaatgatattttggatgcaa |
407 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |
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| T |
20926680 |
ggtgtatttttggcgattttaatgatattttggatgcaa |
20926718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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