View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_high_10 (Length: 234)
Name: NF18224_high_10
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 5035695 - 5035540
Alignment:
| Q |
20 |
aacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctt |
119 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | || ||| |||||| |
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| T |
5035695 |
aacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctt |
5035596 |
T |
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| Q |
120 |
tccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctc |
175 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5035595 |
tccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctc |
5035540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 2525837 - 2525671
Alignment:
| Q |
13 |
catcatcaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctaca |
112 |
Q |
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||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||| || || |
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| T |
2525837 |
catcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaact |
2525738 |
T |
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| Q |
113 |
ctccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctc |
179 |
Q |
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| T |
2525737 |
atcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctctc |
2525671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 2491195 - 2491043
Alignment:
| Q |
26 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta |
125 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| | ||||| ||||||| | || ||| |||||||||||| |
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| T |
2491195 |
agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta |
2491096 |
T |
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| Q |
126 |
atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct |
178 |
Q |
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||||||||||||||||||||||||| ||||||||| | |||||||| |||||| |
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| T |
2491095 |
atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctct |
2491043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 2486373 - 2486222
Alignment:
| Q |
27 |
gtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaa |
126 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||| ||||| ||||||| | ||| ||||||||||| | |
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| T |
2486373 |
gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca |
2486274 |
T |
|
| Q |
127 |
tcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct |
178 |
Q |
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|||||||||| | ||||||||||| ||||||| | ||||||||||||||| |
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| T |
2486273 |
tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctct |
2486222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 2536647 - 2536575
Alignment:
| Q |
31 |
caggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctcc |
103 |
Q |
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| T |
2536647 |
caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc |
2536575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 2534294 - 2534231
Alignment:
| Q |
114 |
tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc |
177 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2534294 |
tccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctc |
2534231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 2519279 - 2519148
Alignment:
| Q |
47 |
gtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttcc |
146 |
Q |
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||||||||||||||||||||||||||||| || |||||| || |||| |||||| | ||| ||||||||||| ||||||||||||| ||||||| |
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| T |
2519279 |
gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc |
2519180 |
T |
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| Q |
147 |
ctaatattacatcacttaatatcactctctct |
178 |
Q |
| |
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| || |||||||||| || |||||||||||| |
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| T |
2519179 |
ccaacgttacatcactcaacatcactctctct |
2519148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 2467597 - 2467446
Alignment:
| Q |
26 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta |
125 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||| ||||||| ||||| | |||||||||| ||| || ||| | | ||| ||||||| ||| |
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| T |
2467597 |
agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc |
2467498 |
T |
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| Q |
126 |
atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc |
177 |
Q |
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|||||||||||||||||||||| ||||| | |||| || | ||||||||||| |
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| T |
2467497 |
atcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc |
2467446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 5106306 - 5106380
Alignment:
| Q |
26 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatc |
100 |
Q |
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||||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |||||||| ||||| |||| |
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| T |
5106306 |
agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc |
5106380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 44575183 - 44575227
Alignment:
| Q |
34 |
gtctctctccctcgtttcaaaacagtttctgtccatcaccaatcg |
78 |
Q |
| |
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|||||||||| |||| |||||||||||||| || ||||||||||| |
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| T |
44575183 |
gtctctctccatcgtctcaaaacagtttctctcaatcaccaatcg |
44575227 |
T |
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