View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_high_4 (Length: 286)
Name: NF18224_high_4
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 26233757 - 26233499
Alignment:
| Q |
10 |
aagtttccaagccctaaatatttttcttcaaacaaagtttcctagcaaatatg-agagatataacctatgtgtgttaaaatatgtattttttgaataggt |
108 |
Q |
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| T |
26233757 |
aagtttccaagccctaaatatttttcttgaaacaaagtttcctagcaaatatgtagagatataacctatgtgtgttaaaatatgtattttttgaataggt |
26233658 |
T |
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| Q |
109 |
atatgagttnnnnnnnnnnnnnnggtgtgtatgtgacacataaggaatacaattatgaaacgtaagagataagagattggggaagtttggtgggaaatct |
208 |
Q |
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| T |
26233657 |
atatgagtttatatatata----ggtgtgtatgtgacacataaggaatacaattatgaaacgtaagagataagagattggagaagtttggtgggaaagct |
26233562 |
T |
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| Q |
209 |
ctattctttagggatcagtttgaaggggactaaattggaccatgtcgttgacagagaaagaag |
271 |
Q |
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| T |
26233561 |
ctattctttagggatcagtttgaaggggactaaattggaccatgtcgttgacagagagagaag |
26233499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26233799 - 26233750
Alignment:
| Q |
1 |
tcacaaagtaagtttccaagccctaaatatttttcttcaaacaaagtttcc |
51 |
Q |
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| T |
26233799 |
tcacaaagaaagtttccaagccctaaata-ttttcttcacacaaagtttcc |
26233750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 26233828 - 26233800
Alignment:
| Q |
10 |
aagtttccaagccctaaatatttttcttc |
38 |
Q |
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| T |
26233828 |
aagtttccaagccctaaatatttttcttc |
26233800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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