View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18224_high_7 (Length: 240)

Name: NF18224_high_7
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18224_high_7
NF18224_high_7
[»] chr8 (7 HSPs)
chr8 (8-226)||(1661467-1661685)
chr8 (86-222)||(11144158-11144294)
chr8 (90-223)||(1604082-1604215)
chr8 (90-219)||(11143801-11143930)
chr8 (8-89)||(1604258-1604339)
chr8 (8-89)||(11143677-11143758)
chr8 (134-226)||(44551873-44551964)
[»] chr3 (3 HSPs)
chr3 (86-226)||(55039985-55040125)
chr3 (90-219)||(55040353-55040482)
chr3 (8-89)||(55040525-55040606)
[»] chr7 (4 HSPs)
chr7 (86-226)||(13948038-13948178)
chr7 (8-89)||(13947632-13947713)
chr7 (90-153)||(13947756-13947819)
chr7 (120-205)||(1972595-1972680)
[»] chr1 (12 HSPs)
chr1 (86-226)||(35163403-35163543)
chr1 (86-226)||(29393911-29394051)
chr1 (86-222)||(30402760-30402896)
chr1 (86-222)||(30409317-30409453)
chr1 (90-219)||(30403124-30403253)
chr1 (90-219)||(30409681-30409810)
chr1 (90-205)||(29394293-29394408)
chr1 (90-219)||(35163046-35163175)
chr1 (8-89)||(29394451-29394532)
chr1 (8-89)||(30403296-30403377)
chr1 (8-89)||(30409853-30409934)
chr1 (20-89)||(35162934-35163003)
[»] chr5 (3 HSPs)
chr5 (90-222)||(9260486-9260618)
chr5 (90-226)||(9260845-9260981)
chr5 (8-89)||(9261024-9261105)
[»] chr6 (3 HSPs)
chr6 (141-223)||(32445856-32445938)
chr6 (8-89)||(2311901-2311982)
chr6 (134-226)||(14986911-14987002)
[»] chr4 (3 HSPs)
chr4 (120-205)||(36892665-36892750)
chr4 (20-82)||(46623737-46623799)
chr4 (89-117)||(46623660-46623688)
[»] chr2 (1 HSPs)
chr2 (120-205)||(26450122-26450207)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 1661685 - 1661467
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaataaataaataaactttaca 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661685 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaataaataaataaactttaca 1661586  T
Q  108 taaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagctg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  1661585 taaattgataaagattgtcctttgagaaaatagtgatagttttggtggacttcgtcgaggtggtttatgttttttatggtgtgctctcgagggacagcag 1661486  T
Q  208 gctatgtggtgcctctgtg 226  Q
    ||| |||||||||||||||    
T  1661485 gctgtgtggtgcctctgtg 1661467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 11144158 - 11144294
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11144158 aaataattaaataaactttacataaattgataaagactgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtg 11144257  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctc 222  Q
    |||||||||||| ||||||| |||| |||||||||||    
T  11144258 gtgtgctctcgaaggacagcaggctgtgtggtgcctc 11144294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 1604215 - 1604082
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  1604215 aaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtggactttgtcgatgtggtttctgttttttgtggtgt 1604116  T
Q  190 gctctcgagggacagctggctatgtggtgcctct 223  Q
    | ||||||||| |||| || | ||| ||||||||    
T  1604115 gttctcgaggggcagcaggatgtgtagtgcctct 1604082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 11143801 - 11143930
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  11143801 aaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgt 11143900  T
Q  190 gctctcgagggacagctggctatgtggtgc 219  Q
    | ||| ||||| |||| |||| ||| ||||    
T  11143901 gttcttgaggggcagcaggctgtgtagtgc 11143930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 1604339 - 1604258
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1604339 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 1604258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 11143677 - 11143758
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11143677 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 11143758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 44551873 - 44551964
Alignment:
Q  134 aaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||| |||| |||| ||| |||||||||||    
T  44551873 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtggtgttctctcgaggggcagcaggctgtgtagtgcctctgtg 44551964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 55040125 - 55039985
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55040125 aaataaataaataaactttacataaattgataaagattatcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtg 55040026  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  55040025 gtgtgctctcgagggacagcaggctgtgtggtgcctctgtg 55039985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 55040482 - 55040353
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||||    
T  55040482 aaataaataaactttacataaattgatgaagattgtcttttgagaaaatagtgatatttttggtatactttgtcgaggtggtttctgttttttgtggtgt 55040383  T
Q  190 gctctcgagggacagctggctatgtggtgc 219  Q
    | ||| ||||| |||| |||| ||| ||||    
T  55040382 gttcttgaggggcagcaggctgtgtagtgc 55040353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 55040606 - 55040525
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55040606 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 55040525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 13948038 - 13948178
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  13948038 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttgggggactttgtcgaggtggtttatgttttttgtg 13948137  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  13948138 gtgtgttctcgagggacagcaggctgtgtggtgcctctgtg 13948178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 13947632 - 13947713
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13947632 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 13947713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 13947756 - 13947819
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggt 153  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  13947756 aaataaataaactttacataaattgataaagattgtcttttgagaaaataatgatagttttggt 13947819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 1972595 - 1972680
Alignment:
Q  120 gattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagc 205  Q
    |||||||  |||||||||||||| ||||||||||||||||| |||| ||||||| |||  |||  ||||||| |||||||| ||||    
T  1972595 gattgtctgttgagaaaatagtggtagttttggtggactttttcgaagtggtttctgtcctttgcggtgtgccctcgaggggcagc 1972680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 35163403 - 35163543
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  35163403 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaagtggtttatgttttttgtg 35163502  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    |||||||||||||||||| | |||| |||||||||||||||    
T  35163503 gtgtgctctcgagggacaacaggctgtgtggtgcctctgtg 35163543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 29394051 - 29393911
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29394051 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtg 29393952  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
     ||||||||||||| ||||| || | ||| |||||||||||    
T  29393951 atgtgctctcgaggaacagcaggatgtgtagtgcctctgtg 29393911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 30402896 - 30402760
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  30402896 aaataaataaataaactttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtg 30402797  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctc 222  Q
    |||||||||||| ||||||| |||| |||||||||||    
T  30402796 gtgtgctctcgaaggacagcaggctgtgtggtgcctc 30402760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 30409453 - 30409317
Alignment:
Q  86 aaataaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatg 185  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  30409453 aaataaataaataaactttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtg 30409354  T
Q  186 gtgtgctctcgagggacagctggctatgtggtgcctc 222  Q
    |||||||||||| ||||||| |||| |||||||||||    
T  30409353 gtgtgctctcgaaggacagcaggctgtgtggtgcctc 30409317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 30403253 - 30403124
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  30403253 aaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgt 30403154  T
Q  190 gctctcgagggacagctggctatgtggtgc 219  Q
    | ||| ||||| |||| |||| ||| ||||    
T  30403153 gttcttgaggggcagcaggctgtgtagtgc 30403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 30409810 - 30409681
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  30409810 aaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgt 30409711  T
Q  190 gctctcgagggacagctggctatgtggtgc 219  Q
    | ||| ||||| |||| |||| ||| ||||    
T  30409710 gttcttgaggggcagcaggctgtgtagtgc 30409681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 29394408 - 29394293
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||  ||||||    
T  29394408 aaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgtttttcgtggtgt 29394309  T
Q  190 gctctcgagggacagc 205  Q
    | ||| ||||| ||||    
T  29394308 gttcttgaggggcagc 29394293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 35163046 - 35163175
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  35163046 aaataaaaaaactttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgt 35163145  T
Q  190 gctctcgagggacagctggctatgtggtgc 219  Q
    | ||| ||||| |||| |||| ||| ||||    
T  35163146 gttcttgaggggcagcaggctgtgtagtgc 35163175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 29394532 - 29394451
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29394532 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 29394451  T

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Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 30403377 - 30403296
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30403377 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 30403296  T

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Target: chr1; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 30409934 - 30409853
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30409934 gacatcatgagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 30409853  T

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Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 35162934 - 35163003
Alignment:
Q  20 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35162934 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 35163003  T

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Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 9260618 - 9260486
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||    
T  9260618 aaataaataaactttatataaattgataaagattgtcttttgagaaaatagcgatagttttggtggactttgtcgaggtggtttttgttttttgtagtgt 9260519  T
Q  190 gctctcgagggacagctggctatgtggtgcctc 222  Q
    |||||||||||||||| |||| ||| |||||||    
T  9260518 gctctcgagggacagcaggctgtgtagtgcctc 9260486  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 9260981 - 9260845
Alignment:
Q  90 aaataaataaactttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgt 189  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  9260981 aaataaataaactttacataaattgatagagattgtctgttgagaaaatagtgatagttttggtggattttgtcgaggtggtttctgttttttgtggtgt 9260882  T
Q  190 gctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    ||||||||||| |||| |||| ||| |||||||||||    
T  9260881 gctctcgaggggcagcaggctgtgtagtgcctctgtg 9260845  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 9261105 - 9261024
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||    
T  9261105 gacatcatgagccatgagccacaatcatcacgataatgggagtgaataactaatatgaaatatagttccattagatctaaat 9261024  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 32445856 - 32445938
Alignment:
Q  141 tgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagctggctatgtggtgcctct 223  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||| ||| ||||||||    
T  32445856 tgatagttttggtggactttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctct 32445938  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 2311982 - 2311901
Alignment:
Q  8 gacatcatcagccatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 89  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||| |||||||| |||||    
T  2311982 gacatcatgagccatgagccacaatcatcacgataatgggagtgaatacctaatatcaaatatagttccattagatctaaat 2311901  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 14987002 - 14986911
Alignment:
Q  134 aaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagctggctatgtggtgcctctgtg 226  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |  |||  ||||||||| |||  |||| ||| |||||||||||    
T  14987002 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttatctcgaggggcagtaggctgtgtagtgcctctgtg 14986911  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 36892665 - 36892750
Alignment:
Q  120 gattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagc 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||  ||||||| |||||||| ||||    
T  36892665 gattgtctgttgagaaaatagtgatagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagc 36892750  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 46623799 - 46623737
Alignment:
Q  20 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattaga 82  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  46623799 catgagccactatcatcaccataatgggtgtgattaactattatgaaatatagttccattaga 46623737  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 46623688 - 46623660
Alignment:
Q  89 taaataaataaactttacataaattgata 117  Q
    |||||||||||||||||||||||||||||    
T  46623688 taaataaataaactttacataaattgata 46623660  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 26450122 - 26450207
Alignment:
Q  120 gattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttatggtgtgctctcgagggacagc 205  Q
    |||||||  |||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||  ||||||| |||||||| ||||    
T  26450122 gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagc 26450207  T

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