View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_low_2 (Length: 525)
Name: NF18224_low_2
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 40055884 - 40055372
Alignment:
| Q |
1 |
aaaagggatgccaaatgggggtgatgtgtttgcatggggtgggttgttaggtggatgtaggatacatgggaatgttgagatagcaaagcaagcagctcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40055884 |
aaaagggatgccaaatgggggtgatgtgtttgcatggggtgggttgttaggtggatgtaggatacatgggaatgttgagatagcaaagcaagcagctcag |
40055785 |
T |
|
| Q |
101 |
caagtaatggagattaaacctgaagatggtggggtttattctgtcatggctaatatttatgctaatacagagcaatgggatgatttagttaagattagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40055784 |
caagtaatggagattaaacctgaagatggtggggtttattctgtcatggctaatatttatgctaatacagagcaatgggatgatttagttaagattagga |
40055685 |
T |
|
| Q |
201 |
aatcgttgggtgctaatagaagagctaagaaaatcactggcactagtttgattagactcaatgagcattaacaaaatgccaatatga-----nnnnnnnn |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40055684 |
aatcgttgggtgctaatagaagagctaagaaaatcactggcactagtttgattagactcaatgagcattaacaaaatgccaatatgattttttttttttt |
40055585 |
T |
|
| Q |
296 |
nnngtgaaaataaagttagattagtggaggagacatactctcatgctcggtcagagtaggatttacaaagaaatttacgtgtaacctaccagatgtagaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40055584 |
tttgtgaaaataaagttagattagtggaggagacatactctcatgctcggtcagagtaggatttacaaagaaatttacgtgtaacctaccagatgtagaa |
40055485 |
T |
|
| Q |
396 |
ttccggaatttgaaccagactgacaataagtgtgagcaaaaagtcgaatcatttgtgtcaactgcatttgacaccaaaatgattatttccttagatattc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40055484 |
ttccggaatttgaaccagactgacaataagtgtgagcaaaaagtcgaatcatttgtgtcaactgcatttgacaccaaaatgattatttccttagatattc |
40055385 |
T |
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| Q |
496 |
ttagtgactattt |
508 |
Q |
| |
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| T |
40055384 |
ttggtgactattt |
40055372 |
T |
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