View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_low_3 (Length: 423)
Name: NF18224_low_3
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 2504158 - 2504547
Alignment:
| Q |
17 |
agaattggaattgaacaaatactaacaatgnnnnnnnnnnnntttatagacaatcgttagtaaattagtagttatgttagttttcagagttcgaatcctg |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504158 |
agaattggaattgaacaaatactaacaatgatatatattt--tttatagacagtcgttagtaaattagtagttatgttagttttcagagttcgaatcctg |
2504255 |
T |
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| Q |
117 |
gatctcattcttaaaacttcttcggtatcccttagatcaccggctgagctacctacgcggaacagtaatgatagagtctaggggaaacaattatggtgga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2504256 |
gatctcattcttaaaacttcttcggtatcccttagatcaccggctgagctacctacgcggaacagtaatgatagagtctaggg-aaacaattatggtgga |
2504354 |
T |
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| Q |
217 |
aaagtgggcattagattattgttttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaataaggaggaagaggta |
316 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504355 |
aaagtgggcattagatcattggtttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaataaggaggaagaggta |
2504454 |
T |
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| Q |
317 |
gtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgactagtgttgat |
409 |
Q |
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| T |
2504455 |
gtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgactagtgttgat |
2504547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 1159507 - 1159431
Alignment:
| Q |
81 |
ttagtagttatgttagttttcagagttcgaatcctggatctcattcttaaaacttcttcggtatcccttagatcacc |
157 |
Q |
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| T |
1159507 |
ttagtggttatgttagttttcagggtttgaatcttagacctctttcttaaaacttcttcgatattccttagctcacc |
1159431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 29258026 - 29257990
Alignment:
| Q |
62 |
atagacaatcgttagtaaattagtagttatgttagtt |
98 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
29258026 |
atagacaattgttaataaattagtagttatgttagtt |
29257990 |
T |
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