View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18224_low_7 (Length: 262)
Name: NF18224_low_7
Description: NF18224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18224_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 47006233 - 47006474
Alignment:
| Q |
5 |
atgaagattaaaagcaaacatacctgttgaactccaagtcatgagaaagttaaaagcatatgatataatccaagaacacaaccagttaactaaggttact |
104 |
Q |
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| T |
47006233 |
atgaagattaaaagcaaacatacctgttgaactccaagtcatgagaaagttaaaagcatatgatataatccaagaacacaaccagttaactaaggttact |
47006332 |
T |
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| Q |
105 |
aaacttccagcagaacccttaacgttaataggaaatatctgaaaaataaaatataaccatttatcatatcattctgagggagtgagaatttattatgttt |
204 |
Q |
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| T |
47006333 |
aaacttccagcagaacccttaacgttaataggaaatatctgaaaaataaaatataaccatttatcatatcattctgagggagtgagaatttattatgttt |
47006432 |
T |
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| Q |
205 |
gcatgtaaattttaacgagttccggcatattaagatgaagct |
246 |
Q |
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| T |
47006433 |
gcatgtaaattttaacgagttccggcatattaagatgaagct |
47006474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 47000912 - 47001033
Alignment:
| Q |
24 |
atacctgttgaactccaagtcatgagaaagttaaaagcatatgatataatccaagaacacaaccagttaactaaggttactaaacttccagcagaaccct |
123 |
Q |
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| T |
47000912 |
atacctgctgaattccaactcatgaggaagttaaaagcatatgatacaatccaagaacacaaccagtgaacaaatgttacaaagcttccagcagaaccct |
47001011 |
T |
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| Q |
124 |
taacgttaataggaaatatctg |
145 |
Q |
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| T |
47001012 |
tcacattgatgggaaatatctg |
47001033 |
T |
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