View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18225_low_2 (Length: 495)
Name: NF18225_low_2
Description: NF18225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18225_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 29395775 - 29396230
Alignment:
| Q |
19 |
tcaccggcagtttttcgggccgacgctggcggatcaggtcaaaccatgattgattccggatcagaatttacttatttagttagtgaagcttatgataaag |
118 |
Q |
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| T |
29395775 |
tcaccggcagtttttcgggccgacgcaggcggatcaggtcaaaccatgattgattccggatcagaatttacttatttagttagtgaagcttatgataaag |
29395874 |
T |
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| Q |
119 |
tgcgggctcaggtagttagagctgtggggcccagattaaagaagggttacgtgtacggtggagtagctgacatgtgttttgacagtgtaaaagcagttga |
218 |
Q |
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| T |
29395875 |
tgcgggctcaagtagttagagctgtggggcccagattaaagaagggttacgtgtacggtggagtagctgacatgtgttttgacagtgtaaaagcagttga |
29395974 |
T |
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| Q |
219 |
aatcggacggctgataggtgagatggtgtttgaatttgaaaggggtgtggaggttgtgattcctatggaaagagtacttgctgacgtgggtggtggggtc |
318 |
Q |
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| T |
29395975 |
aatcggacggctgataggtgagatggtctttgaatttgaaagaggtgtggaggttgtgattccaaaggaaagagtacttgctgacgtgggtggtggggtc |
29396074 |
T |
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| Q |
319 |
cactgtgttgggattggaagttcagataaattaggtgctgcaagtaatattattggaaactttcatcaacaaaatctatgggtggaatttgatcttgtga |
418 |
Q |
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| T |
29396075 |
cactgtgttgggattggaagttcagataaattaggtgctgcaagtaatattattggaaactttcatcaacaaaatctatgggtggaatttgatcttgtga |
29396174 |
T |
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| Q |
419 |
ggcgtagggtcgggtttggtaaggctgattgtagcagattagtgaagtagagatga |
474 |
Q |
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| T |
29396175 |
ggcgtagggtggggtttggtaaggctgattgtagcagattagtgaagtagagatga |
29396230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 454
Target Start/End: Original strand, 33251183 - 33251477
Alignment:
| Q |
157 |
aagaagggttacgtgtacggtggagtagctgacatgtgttttgacagtgtaaaagcagttgaaatcggacggctgataggtgagatggtgtttgaatttg |
256 |
Q |
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| T |
33251183 |
aagaagggatacatgtacggtggagtagctgacatttgttttga---tggagatgcaattgaaatcggacggctcgtaggagacatggtgtttgagtttg |
33251279 |
T |
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| Q |
257 |
aaaggggtgtggaggttgtgattcctatggaaagagtacttgctgacgtgggtggtggggtccactgtgttgggattggaagttcagataaattaggtgc |
356 |
Q |
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| T |
33251280 |
agaaaggagtgcaaatagtgattccaaaagagagggttcttgccacggtggatggtggggtccattgtttgggaatgggaagatcagaaagattgggtgc |
33251379 |
T |
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| Q |
357 |
tgcaagtaatattattggaaactttcatcaacaaaatctatgggtggaatttgatcttgtgaggcgtagggtcgggtttggtaaggctgattgtagca |
454 |
Q |
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| T |
33251380 |
gggtggtaacattattggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagca |
33251477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 33251067 - 33251119
Alignment:
| Q |
41 |
acgctggcggatcaggtcaaaccatgattgattccggatcagaatttacttat |
93 |
Q |
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| T |
33251067 |
acgctggtgggtcaggtcaaaccatgattgattcgggatcagaatttacttat |
33251119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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