View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18225_low_5 (Length: 248)
Name: NF18225_low_5
Description: NF18225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18225_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 24561460 - 24561697
Alignment:
| Q |
2 |
tatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaatacatga |
101 |
Q |
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| T |
24561460 |
tatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaatacatga |
24561559 |
T |
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| Q |
102 |
gttgcttattcatgaagcaactacaataaagattttaagggtaaccaattacggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttc |
201 |
Q |
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| T |
24561560 |
gttgcttattcatgaagcaactacaataaagattttaagggtaaccaattgcggattttgattctcaaatatcaaatggtgatgcagttcaaatgctttc |
24561659 |
T |
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| Q |
202 |
aataggatatctcttaaaccaatggtagtctcttcatc |
239 |
Q |
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| T |
24561660 |
aataggatatctcttaaaccaatggtagtctcttcatc |
24561697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 37223842 - 37223647
Alignment:
| Q |
1 |
atatattgcagatcctttgttagtcttcctttatcggccacaacaaaacaacctcaatgaaaagcaagactgcacaataatactccaaatcaaatacatg |
100 |
Q |
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||||| ||| |||||||||||| | || |||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37223842 |
atatactgctgatcctttgttactttttctttattggccataacaaaacaatgtcaatgaagagcaagactgcacaataatactccaaatcaaatacata |
37223743 |
T |
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| Q |
101 |
agttgcttattcatgaagcaactacaataaagattttaagggtaaccaattacggattttgattctcaaatatcaaatggtgatgcagttcaaatg |
196 |
Q |
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| T |
37223742 |
agttgcttatttatgaagcaacaacaataaagattttaaaggtaaccaattgtggattttgattctcaaatatcaaatggtgacatagttcaaatg |
37223647 |
T |
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