View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18226_high_1 (Length: 565)

Name: NF18226_high_1
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18226_high_1
NF18226_high_1
[»] chr8 (11 HSPs)
chr8 (1-165)||(30224173-30224337)
chr8 (2-163)||(3375548-3375709)
chr8 (1-167)||(5567367-5567533)
chr8 (11-163)||(31032137-31032285)
chr8 (3-151)||(6428699-6428845)
chr8 (1-165)||(25248955-25249113)
chr8 (1-129)||(3379238-3379366)
chr8 (1-80)||(36535956-36536035)
chr8 (47-109)||(14935576-14935638)
chr8 (112-165)||(5567676-5567729)
chr8 (16-79)||(29274786-29274849)
[»] chr4 (13 HSPs)
chr4 (1-165)||(7040304-7040468)
chr4 (1-165)||(23564799-23564963)
chr4 (1-165)||(52520542-52520708)
chr4 (1-165)||(52518700-52518866)
chr4 (1-165)||(18656051-18656215)
chr4 (1-165)||(23566473-23566628)
chr4 (1-109)||(23985773-23985881)
chr4 (1-109)||(3529271-3529379)
chr4 (17-165)||(3274580-3274728)
chr4 (1-82)||(54296454-54296535)
chr4 (9-109)||(52545234-52545333)
chr4 (9-109)||(24807423-24807522)
chr4 (59-109)||(18395816-18395866)
[»] chr2 (5 HSPs)
chr2 (1-165)||(29758063-29758227)
chr2 (97-163)||(8759203-8759269)
chr2 (40-154)||(20516116-20516227)
chr2 (108-158)||(31155713-31155763)
chr2 (49-109)||(18739671-18739730)
[»] chr7 (12 HSPs)
chr7 (1-163)||(44963108-44963270)
chr7 (1-165)||(28124712-28124878)
chr7 (1-165)||(28126539-28126705)
chr7 (1-165)||(20046620-20046787)
chr7 (1-165)||(4895525-4895691)
chr7 (1-109)||(37405574-37405682)
chr7 (77-163)||(44962228-44962314)
chr7 (3-59)||(36989576-36989632)
chr7 (120-166)||(6322930-6322976)
chr7 (61-101)||(25471955-25471995)
chr7 (131-163)||(36989612-36989644)
chr7 (122-166)||(41966676-41966720)
[»] chr6 (17 HSPs)
chr6 (1-163)||(19645424-19645586)
chr6 (1-165)||(5376818-5376985)
chr6 (1-157)||(5378681-5378840)
chr6 (12-163)||(15149180-15149331)
chr6 (1-165)||(1088777-1088945)
chr6 (1-109)||(15868391-15868499)
chr6 (1-109)||(33866098-33866206)
chr6 (2-109)||(33869245-33869352)
chr6 (1-109)||(15866579-15866687)
chr6 (1-81)||(9415095-9415175)
chr6 (95-165)||(9414962-9415032)
chr6 (108-165)||(9415050-9415107)
chr6 (9-109)||(14611083-14611182)
chr6 (38-109)||(32079909-32079980)
chr6 (49-109)||(14620510-14620570)
chr6 (125-165)||(30376225-30376265)
chr6 (9-57)||(14618975-14619022)
[»] chr1 (14 HSPs)
chr1 (1-159)||(17449260-17449418)
chr1 (1-165)||(16808703-16808869)
chr1 (1-109)||(3282800-3282908)
chr1 (1-109)||(3284501-3284609)
chr1 (1-109)||(9312028-9312136)
chr1 (58-168)||(48940616-48940726)
chr1 (1-109)||(9310411-9310519)
chr1 (17-109)||(37664695-37664787)
chr1 (17-109)||(37674417-37674509)
chr1 (17-109)||(37702185-37702277)
chr1 (9-101)||(902084-902175)
chr1 (49-109)||(5924946-5925006)
chr1 (1-62)||(48941646-48941707)
chr1 (126-165)||(51020570-51020609)
[»] chr3 (6 HSPs)
chr3 (1-166)||(17402906-17403074)
chr3 (1-165)||(6789563-6789727)
chr3 (1-163)||(1139958-1140108)
chr3 (9-96)||(20302639-20302725)
chr3 (17-96)||(20327181-20327259)
chr3 (9-66)||(41874441-41874497)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-109)||(6225-6333)
[»] chr5 (4 HSPs)
chr5 (1-109)||(39787183-39787291)
chr5 (9-53)||(6569888-6569932)
chr5 (11-109)||(25076250-25076348)
chr5 (11-109)||(25134219-25134317)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-109)||(58785-58893)
[»] scaffold0048 (2 HSPs)
scaffold0048 (444-550)||(61773-61879)
scaffold0048 (444-550)||(50490-50593)
[»] scaffold0185 (1 HSPs)
scaffold0185 (266-550)||(3308-3575)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-109)||(39144-39243)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 30224337 - 30224173
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224337 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 30224238  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224237 agttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 30224173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 3375548 - 3375709
Alignment:
Q  2 gtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactata 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3375548 gtacaatagagttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaactaactata 3375647  T
Q  102 attgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
     ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  3375648 gttgattactaacagaagtctaactaccttaactaactccacataacttccaactatcttaa 3375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 5567533 - 5567367
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  5567533 agtacaatagttttcctatatatagagattagtttgagtaactaactccaactaacttctaactaagctactaactctagtttagctatcaactaactat 5567434  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacata 167  Q
    | |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||    
T  5567433 agttgattactaactctagtctaactactttaactaacttcacataacttccagctattttaacata 5567367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 31032137 - 31032285
Alignment:
Q  11 tgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgattac 110  Q
    |||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  31032137 tgttcctatatatagagattagtttgagtaactaactctaa----cttctaaccaagctactaaccctagtttacttatcaactaactatagttgattac 31032232  T
Q  111 taactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31032233 taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 31032285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 6428845 - 6428699
Alignment:
Q  3 tacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||     
T  6428845 tacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttttaactaaggtactaactctagtttacttatcaactaattatag 6428746  T
Q  103 ttgattactaactctagtctaactaccttaactaactccacataacttc 151  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  6428745 ttgattactaactcttgtctaactac--taactaactccacataacttc 6428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 25249113 - 25248955
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttac---ttatcaactaac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||| ||||    
T  25249113 agtacaatagtgttcctatatatagagattagtttgagtaactacctttaactaacttctaaccaagctactaactctagtttacttattatcaattaac 25249014  T
Q  98 tataattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    |||| |||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  25249013 tatagttgattactaactctagtc---------taactaactccacataacttccaactatcttaaca 25248955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 3379238 - 3379366
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||  ||||||||||||||    
T  3379238 agtacaatagttttccttaatatagagattagtttgagtaactaactctaactaacttctaactaaactactaactctagtttaactatcaactaactat 3379337  T
Q  101 aattgattactaactctagtctaactacc 129  Q
    | |||||||||||||||||||||||||||    
T  3379338 agttgattactaactctagtctaactacc 3379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36535956 - 36536035
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctag 80  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36535956 agtacaacagtattgctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctag 36536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 14935638 - 14935576
Alignment:
Q  47 tctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  14935638 tctaactaacttctaaccaagttactaactctagtttacctatcaactaactatagttgatta 14935576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 5567676 - 5567729
Alignment:
Q  112 aactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  5567676 aactctagtctaactaccttaactaacttcacataacttccagctattttaaca 5567729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 29274786 - 29274849
Alignment:
Q  16 ctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactcta 79  Q
    ||||||||| |||||| || |||||| || |||||||||||   ||||||||||||||||||||    
T  29274786 ctatatataaagattaattggagtaattaactctaactaacccgtaaccaagctactaactcta 29274849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 7040468 - 7040304
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7040468 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 7040369  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7040368 agttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 7040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 23564799 - 23564963
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23564799 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 23564898  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23564899 agttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 23564963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 52520708 - 52520542
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52520708 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 52520609  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  52520608 agttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 52520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 52518866 - 52518700
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52518866 agtacaacagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 52518767  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  52518766 agttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 52518700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 18656215 - 18656051
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  18656215 agtacaatagttttcctatatatagagattagtttgagtaactaactctaactaacttctaactaagctactaactctagtttagctatcaactaactat 18656116  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| ||||||    
T  18656115 agttgattactaactctagtctaactaccttaactaacttcacataacttccggctattttaaca 18656051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 23566473 - 23566628
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23566473 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaagtctagtttacttatcaactaactat 23566572  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | |||||||||||||||||||         |||||||||||||||||||| ||||||||||||||    
T  23566573 agttgattactaactctagtc---------taactaactccacataactttcaactatcttaaca 23566628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23985881 - 23985773
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23985881 agtacaatagtgttcctatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 23985782  T
Q  101 aattgatta 109  Q
    | |||||||    
T  23985781 agttgatta 23985773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 3529271 - 3529379
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  3529271 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactttagtttacctatcaactaactac 3529370  T
Q  101 aattgatta 109  Q
    | |||||||    
T  3529371 agttgatta 3529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 3274580 - 3274728
Alignment:
Q  17 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgattactaactc 116  Q
    |||||||||| |||| ||||||||| || ||||||||||||||||| ||||| ||||||||| |||||| |||||||||| |||| |||||||||||||     
T  3274580 tatatatagaaattaatttgagtaattaactctaactaacttctaatcaagccactaactcttgtttacctatcaactaattatagttgattactaacta 3274679  T
Q  117 tagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    |||| | |||||||||||||||| || ||||||||||||||| ||||||    
T  3274680 tagttttactaccttaactaacttcatataacttccaactattttaaca 3274728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 54296535 - 54296454
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54296535 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtt 54296454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 52545234 - 52545333
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatt 108  Q
    ||||||||||||||||||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  52545234 agtgttcctatatatagagtttagtt-gtgtaactaactctaaccaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatt 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 24807522 - 24807423
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatt 108  Q
    ||||||||||||||||||  |||||| | ||||||| ||||  ||||||  |||||||||| ||||||||| ||||| ||||||||||||||| ||||||    
T  24807522 agtgttcctatatatagattttagtt-gtgtaactaactcttcctaactcttaaccaagcttctaactctaatttacctatcaactaactatagttgatt 24807424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 18395816 - 18395866
Alignment:
Q  59 ctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||| |||||||    
T  18395816 ctaaccaacctattaactatagtttacctatcaactaactatagttgatta 18395866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29758227 - 29758063
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29758227 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 29758128  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29758127 agttgattactaagtctagtctaactaccttaactaactccacataacttccaactatcttaaca 29758063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 8759203 - 8759269
Alignment:
Q  97 ctataattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8759203 ctatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 8759269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 20516116 - 20516227
Alignment:
Q  40 aactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgattactaactctagtctaactaccttaactaact 139  Q
    ||||| ||||||||| ||| |||||||||||||||| |||| | |||||   |||||||||| || ||||||||||| ||| ||| ||||||||||||||    
T  20516116 aactaactctaactatcttttaaccaagctactaaccctagctaactta---actaactatagttaattactaactccagtttaattaccttaactaact 20516212  T
Q  140 ccacataacttccaa 154  Q
     ||||||||||||||    
T  20516213 gcacataacttccaa 20516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 31155713 - 31155763
Alignment:
Q  108 tactaactctagtctaactaccttaactaactccacataacttccaactat 158  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  31155713 tactaactctagtttaactaccttaactaactccgcataacttccaactat 31155763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 18739730 - 18739671
Alignment:
Q  49 taactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||||||||||||||||    
T  18739730 taactaact-ctaaccagactactaactctagttaacgtatcaactaactataattgatta 18739671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 44963270 - 44963108
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44963270 agtacaatagtgttcctatatatagagattaatttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaactaactat 44963171  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44963170 agttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 44963108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28124712 - 28124878
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28124712 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 28124811  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  28124812 agttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 28124878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28126539 - 28126705
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28126539 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 28126638  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  28126639 agttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 28126705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 20046620 - 20046787
Alignment:
Q  1 agtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaacta 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20046620 agtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaacta 20046719  T
Q  100 taattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    || ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  20046720 tagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 20046787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4895691 - 4895525
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4895691 agtacaatagtgttcctatatatagagattagtttgagtaaataactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 4895592  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | |||||| |||||||||||||||||||| |||||||||||||||||| ||||||    
T  4895591 agttgattacaattactctaatctaactaccttaactaactacacataacttccaactattttaaca 4895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37405574 - 37405682
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37405574 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttatctatcaactaactat 37405673  T
Q  101 aattgatta 109  Q
    | |||||||    
T  37405674 agttgatta 37405682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 44962314 - 44962228
Alignment:
Q  77 ctagtttacttatcaactaactataattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  44962314 ctagtttacttatcaactaactatagttgattactcactcaagtctaactaccttaactaacttcacataacttccaactatgttaa 44962228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 36989576 - 36989632
Alignment:
Q  3 tacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttc 59  Q
    ||||||| |||| |||||||||||||||||||||| |||||| |||||  |||||||    
T  36989576 tacaataatgtttctatatatagagattagtttgaataactaactctacataacttc 36989632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 6322976 - 6322930
Alignment:
Q  120 tctaactaccttaactaactccacataacttccaactatcttaacat 166  Q
    |||||||||| ||| |||||||| ||||||||||||||| |||||||    
T  6322976 tctaactaccgtaattaactccatataacttccaactattttaacat 6322930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 25471955 - 25471995
Alignment:
Q  61 aaccaagctactaactctagtttacttatcaactaactata 101  Q
    |||||| ||||||||||||||| || |||||||||||||||    
T  25471955 aaccaacctactaactctagttaacctatcaactaactata 25471995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 36989612 - 36989644
Alignment:
Q  131 taactaactccacataacttccaactatcttaa 163  Q
    |||||||||| ||||||||||||||||||||||    
T  36989612 taactaactctacataacttccaactatcttaa 36989644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 41966720 - 41966676
Alignment:
Q  122 taactaccttaactaactccacataacttccaactatcttaacat 166  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||    
T  41966720 taactactttaattaacacgacataacttccaactatcttaacat 41966676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 19645424 - 19645586
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  19645424 agtacaatagtgttcttatatatagagattagtttgagtaactacctctgactaatttctaaccaagctactaactttagtttacttatcaactaactat 19645523  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  19645524 aattgattactaactctagtctaactaccttaactaactccacatatcttctaactatcttaa 19645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5376985 - 5376818
Alignment:
Q  1 agtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaacta 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5376985 agtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaacta 5376886  T
Q  100 taattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    || ||||||||  | ||||||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  5376885 tagttgattacaattactctagtctaactaccttaactaactacatataacttccaactattttaaca 5376818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 5378840 - 5378681
Alignment:
Q  1 agtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaacta 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5378840 agtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaacta 5378741  T
Q  100 taattgattac--taactctagtctaactaccttaactaactccacataacttccaacta 157  Q
    || ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||    
T  5378740 tagttgattacaattactctagtctaactaccttaactaactacacataacttccaacta 5378681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 15149180 - 15149331
Alignment:
Q  12 gttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgattact 111  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  15149180 gttcctatatatagaaattaatttgagtaactaactctaactaacttctaaccaagctactgaccctagtttacttatcaactaactatagttgattact 15149279  T
Q  112 aactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  15149280 aactcaagtctaactaccttaactaactccgcataacttccaactatcttaa 15149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 1088777 - 1088945
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  1088777 agtacaatagtgttcctatatatagagattagtttgactaactaactctaactaacttctaacaaagctactaactctaatttacttatcaactaactat 1088876  T
Q  101 aattgattactaactctagtctaactaccttaactaactc----cacataacttccaactatcttaaca 165  Q
    | ||||| |||||||||| | ||||||| ||||||||||     |||||||||||||| ||| ||||||    
T  1088877 agttgatcactaactctaatttaactactttaactaactaacttcacataacttccaagtattttaaca 1088945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 15868499 - 15868391
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  15868499 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctattaactctagtttacctatcaactaactat 15868400  T
Q  101 aattgatta 109  Q
    | |||||||    
T  15868399 agttgatta 15868391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 33866206 - 33866098
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33866206 agtacaatagtgttcctatatatagagattagtctgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 33866107  T
Q  101 aattgatta 109  Q
    | |||||||    
T  33866106 agttgatta 33866098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 33869352 - 33869245
Alignment:
Q  2 gtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactata 101  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33869352 gtacaatagtgttcctatatatagagattagtttaagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactata 33869253  T
Q  102 attgatta 109  Q
     |||||||    
T  33869252 gttgatta 33869245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 15866687 - 15866579
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  15866687 agtacaatagtgttcctaaatatagagattagtttgagtaactaactctaactaacttctacccaagctattaactctagtttacctatcaactaactat 15866588  T
Q  101 aattgatta 109  Q
    | |||||||    
T  15866587 agttgatta 15866579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9415175 - 9415095
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagt 81  Q
    ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  9415175 agtacaatagtgttcttatatatagagattagtttcactaactaactctaactaacttctaaccaagctactaactctagt 9415095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 9415032 - 9414962
Alignment:
Q  95 aactataattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  9415032 aactatagttgatcactaactctagtctaactaccttaactaactccgcataacttccaactattttaaca 9414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 9415107 - 9415050
Alignment:
Q  108 tactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  9415107 tactaactctagtctaacttccttaactaactccacataacttccaactattttaaca 9415050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 14611182 - 14611083
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatt 108  Q
    ||||||||||||||||||| |||||| | ||||||| |||||| |||||  |||| ||||||||||||||| ||||| ||||||||||| ||| ||||||    
T  14611182 agtgttcctatatatagagtttagtt-gtgtaactaactctaaataactcttaacgaagctactaactctaatttacctatcaactaaccatagttgatt 14611084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 32079980 - 32079909
Alignment:
Q  38 gtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||| ||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  32079980 gtaactaactctaactaactcttaaccaagcttctaactctagtttacctatcaactaactatagttgatta 32079909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 14620570 - 14620510
Alignment:
Q  49 taactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    |||||||||  ||||||||||||||||| |||||||| ||||||||||  ||| |||||||    
T  14620570 taactaactcttaaccaagctactaactgtagtttacctatcaactaatcatagttgatta 14620510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 30376265 - 30376225
Alignment:
Q  125 ctaccttaactaactccacataacttccaactatcttaaca 165  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  30376265 ctacgttaactaactccacataacttccaactattttaaca 30376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 14619022 - 14618975
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaact 57  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||||||    
T  14619022 agtgttcctatatatagagtttag-ttgtgtaactaactctaactaact 14618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 17449418 - 17449260
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17449418 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacgaagctactaaccctagtttacttatcaactaactat 17449319  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatc 159  Q
    | |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  17449318 agttgattactaactcaagtccaactaccttaactaactccatataacttccaactatc 17449260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16808703 - 16808869
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16808703 agtacaatagtgttcatatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaactat 16808802  T
Q  101 aattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    | ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  16808803 agttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaaca 16808869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3282908 - 3282800
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3282908 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 3282809  T
Q  101 aattgatta 109  Q
    | |||||||    
T  3282808 agttgatta 3282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3284609 - 3284501
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3284609 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 3284510  T
Q  101 aattgatta 109  Q
    | |||||||    
T  3284509 agttgatta 3284501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9312136 - 9312028
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9312136 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 9312037  T
Q  101 aattgatta 109  Q
    | |||||||    
T  9312036 agttgatta 9312028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 48940726 - 48940616
Alignment:
Q  58 tctaaccaagctactaactctagtttacttatcaactaactataattgattactaactctagtctaactaccttaactaactccacataacttccaacta 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48940726 tctaaccaaactactaactctagtttacttatcaactaactatagttgattactaactcttgtctaactaccttaactaactccacataacttccaacta 48940627  T
Q  158 tcttaacatat 168  Q
    | |||||||||    
T  48940626 ttttaacatat 48940616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9310519 - 9310411
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310519 agtacaatagtgttcctatatatagatattaatttgagtaactaactctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 9310420  T
Q  101 aattgatta 109  Q
    | |||||||    
T  9310419 agttgatta 9310411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 37664695 - 37664787
Alignment:
Q  17 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  37664695 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37664787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 37674417 - 37674509
Alignment:
Q  17 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  37674417 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37674509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 37702277 - 37702185
Alignment:
Q  17 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  37702277 tatatatagagattagtttgaataactaactctaactaatttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37702185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 902175 - 902084
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactata 101  Q
    |||||||||||||| |||| ||| || | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  902175 agtgttcctatatagagagtttaatt-gtgtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactata 902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 5924946 - 5925006
Alignment:
Q  49 taactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||    
T  5924946 taactaacttctaaccaaactactaactctaatttacctatcaactaactatagttgatta 5925006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48941707 - 48941646
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaa 62  Q
    ||||||||||||||  ||| |||||||||||||||||||||| | |||||||||||||||||    
T  48941707 agtacaatagtgtttatatgtatagagattagtttgagtaaccaactctaactaacttctaa 48941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 51020609 - 51020570
Alignment:
Q  126 taccttaactaactccacataacttccaactatcttaaca 165  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  51020609 taccttaaccaactccacataacttccaactattttaaca 51020570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 17402906 - 17403074
Alignment:
Q  1 agtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaacta 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17402906 agtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaacta 17403005  T
Q  100 taattgattac--taactctagtctaactaccttaactaactccacataacttccaactatcttaacat 166  Q
    || ||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  17403006 tagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaacat 17403074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 6789727 - 6789563
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6789727 agtacaatagtattcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttcacttatccactaactat 6789628  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 165  Q
    |  ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  6789627 acatgattaccaactctagtctaactaccttaactaactacacattacttccaactattttaaca 6789563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1140108 - 1139958
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||    
T  1140108 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacc------------ctagtttacttatcaactaactat 1140021  T
Q  101 aattgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 163  Q
    | |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  1140020 agttgattactaactcaagtccaactaccttaactaactccatataacttccaactatcttaa 1139958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 20302725 - 20302639
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaa 96  Q
    ||||||| ||||||||||||||||||||| |||| | || ||||| |||| ||||||| ||||||| ||||||| || | ||||||||    
T  20302725 agtgttcttatatatagagattagtttgaataaccaactataacttactt-taaccaatctactaagtctagttaacctttcaactaa 20302639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20327259 - 20327181
Alignment:
Q  17 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaa 96  Q
    |||||| ||||||||||||||||||| | || ||||| |||| ||||||||||||||| ||||||| || | ||||||||    
T  20327259 tatatagagagattagtttgagtaaccaactataacttactt-taaccaagctactaagtctagttaacctttcaactaa 20327181  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 41874497 - 41874441
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaa 66  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||||||  |||||||    
T  41874497 agtgttcctatatatagagtttag-ttgtgtaactaactctaactaactcttaaccaa 41874441  T

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Target: scaffold0251 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6333 - 6225
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  6333 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaattaactat 6234  T
Q  101 aattgatta 109  Q
    | |||||||    
T  6233 agttgatta 6225  T

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Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 39787183 - 39787291
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39787183 agtaaaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactat 39787282  T
Q  101 aattgatta 109  Q
    | |||||||    
T  39787283 agttgatta 39787291  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 6569932 - 6569888
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaact 53  Q
    |||||||||||||||||||||||||| || |||||| ||||||||    
T  6569932 agtgttcctatatatagagattagttggactaactaactctaact 6569888  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 25076250 - 25076348
Alignment:
Q  11 tgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||| |||||||||||| || | |||  ||||||||||||   |||   ||| |||| ||||||| || ||||||||||||||| |||||||    
T  25076250 tgttcctatatctagagattagttggaatgacttactctaactaactctaaacttggcttctaattctagttaacctatcaactaactatagttgatta 25076348  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 25134219 - 25134317
Alignment:
Q  11 tgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatta 109  Q
    ||||||||||| |||||||||||| || | |||  ||||||||||||   |||   ||| |||| ||||||| || ||||||||||||||| |||||||    
T  25134219 tgttcctatatctagagattagttggaatgacttactctaactaactctaaacttggcttctaattctagttaacctatcaactaactatagttgatta 25134317  T

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Target: scaffold0057 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 58893 - 58785
Alignment:
Q  1 agtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  58893 agtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctactaactaactat 58794  T
Q  101 aattgatta 109  Q
    | |||||||    
T  58793 agttgatta 58785  T

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Target: scaffold0048 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 444 - 550
Target Start/End: Complemental strand, 61879 - 61773
Alignment:
Q  444 tcatgtctttattaactgtttttgcttttctcttatgctttccgtttaaagagtacagataattttttagaaacagcaggttgctttcaataagcttaag 543  Q
    |||||| |||||||| ||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  61879 tcatgtttttattaattgtttttgcttttctcttatgttttgcttttaaaaagtacagataattttttagaaagagcaggttgctttcaataagcttaag 61780  T
Q  544 aggaaat 550  Q
    |||||||    
T  61779 aggaaat 61773  T

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Target: scaffold0048; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 444 - 550
Target Start/End: Complemental strand, 50593 - 50490
Alignment:
Q  444 tcatgtctttattaactgtttttgcttttctcttatgctttccgtttaaagagtacagataattttttagaaacagcaggttgctttcaataagcttaag 543  Q
    |||||| |||||||| ||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||    |||||||||||||||||||||||    
T  50593 tcatgtttttattaattgtttttgcttttctcttatgttttgcttttaaaaagtacagataattttttagaaa---aaggttgctttcaataagcttaag 50497  T
Q  544 aggaaat 550  Q
    |||||||    
T  50496 aggaaat 50490  T

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Target: scaffold0185 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 266 - 550
Target Start/End: Complemental strand, 3575 - 3308
Alignment:
Q  266 ttactttggttagtcctcttaagcaggtacaataattatggagattcttctcagtattctttctagttaagttaccggcggcatcctctttttgg-gata 364  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||| || |||||||||||||| |||||| ||| ||||||||||||||||||| ||||    
T  3575 ttactttggttagtcctcttaaccagatacaataattaaggagattattttcagtattctttctggttaagatactggcggcatcctctttttggggata 3476  T
Q  365 gattcttataatataggtggctttcataaagatctaaaaggaataatttaacatatttgtattatgaatatcattgttttcatgtctttattaactgttt 464  Q
    |||     |||| | | |  |||  ||||     ||||  || ||||||||||||||||| |||| |||||||| ||||||||||||||||||   ||||    
T  3475 gat-----taatgttg-tacctt--ataa-----taaa--gattaatttaacatatttgtcttataaatatcatggttttcatgtctttattagtggttt 3391  T
Q  465 ttgcttttctcttatgctttccgtttaaagagtacagataattttttagaaacagcaggttgctttcaataagcttaagaggaaat 550  Q
    |||||| ||||||||| ||| | |||| | ||| |  |||||||||||||||    ||||||||||||||||||||||| ||||||    
T  3390 ttgcttctctcttatgttttgcttttagaaagtcccaataattttttagaaa---aaggttgctttcaataagcttaagcggaaat 3308  T

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Target: scaffold0006 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 39243 - 39144
Alignment:
Q  9 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaactataattgatt 108  Q
    ||||||||||||||||||| |||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39243 agtgttcctatatatagagtttagtt-gtgtaactaactttaactaacttctaaccaagctactaactctagtttacttatcaactaactatagttgatt 39145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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