View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18226_high_3 (Length: 467)

Name: NF18226_high_3
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18226_high_3
NF18226_high_3
[»] chr1 (14 HSPs)
chr1 (82-459)||(14924984-14925366)
chr1 (76-227)||(11469099-11469252)
chr1 (76-166)||(11469705-11469795)
chr1 (81-166)||(31787501-31787586)
chr1 (81-166)||(31788216-31788301)
chr1 (76-166)||(14924692-14924782)
chr1 (87-153)||(7464023-7464089)
chr1 (87-153)||(11426882-11426948)
chr1 (87-153)||(11427460-11427526)
chr1 (87-153)||(7463444-7463510)
chr1 (87-153)||(37889908-37889974)
chr1 (87-153)||(37890486-37890552)
chr1 (85-153)||(2687680-2687748)
chr1 (17-65)||(43275804-43275852)
[»] scaffold0189 (2 HSPs)
scaffold0189 (77-459)||(12501-12888)
scaffold0189 (76-166)||(12202-12292)
[»] chr4 (13 HSPs)
chr4 (104-452)||(10420963-10421315)
chr4 (76-227)||(6246802-6246955)
chr4 (76-166)||(6247410-6247501)
chr4 (76-166)||(10421521-10421611)
chr4 (76-166)||(15481510-15481600)
chr4 (81-164)||(15481058-15481141)
chr4 (118-164)||(50709719-50709765)
chr4 (92-161)||(53664246-53664315)
chr4 (92-164)||(50710359-50710431)
chr4 (94-153)||(2093865-2093924)
chr4 (112-154)||(13856645-13856687)
chr4 (11-65)||(37306433-37306487)
chr4 (112-164)||(53665028-53665080)
[»] chr3 (6 HSPs)
chr3 (275-459)||(45500838-45501022)
chr3 (2-76)||(52366603-52366677)
chr3 (76-166)||(38337417-38337507)
chr3 (81-164)||(38336967-38337048)
chr3 (83-162)||(44022031-44022110)
chr3 (89-151)||(15450256-15450318)
[»] chr8 (12 HSPs)
chr8 (76-227)||(12350528-12350684)
chr8 (76-166)||(12349985-12350075)
chr8 (81-166)||(43971301-43971386)
chr8 (81-161)||(39257657-39257737)
chr8 (81-166)||(43972026-43972111)
chr8 (76-164)||(43924508-43924596)
chr8 (76-166)||(43924958-43925048)
chr8 (88-164)||(38686333-38686409)
chr8 (112-161)||(38687000-38687049)
chr8 (107-164)||(39258391-39258448)
chr8 (92-161)||(33802318-33802387)
chr8 (112-164)||(33801553-33801605)
[»] chr5 (3 HSPs)
chr5 (85-165)||(4554684-4554764)
chr5 (76-227)||(4555269-4555419)
chr5 (87-153)||(6805910-6805976)
[»] chr2 (14 HSPs)
chr2 (81-166)||(4993627-4993712)
chr2 (81-166)||(4975719-4975804)
chr2 (81-164)||(4976447-4976530)
chr2 (81-164)||(4994354-4994437)
chr2 (117-164)||(42369702-42369749)
chr2 (88-161)||(8536167-8536240)
chr2 (112-164)||(8536828-8536880)
chr2 (76-164)||(37545694-37545782)
chr2 (76-164)||(41519867-41519955)
chr2 (11-70)||(34142236-34142295)
chr2 (82-156)||(42370900-42370974)
chr2 (82-126)||(1271255-1271299)
chr2 (11-63)||(27183781-27183833)
chr2 (11-63)||(27833323-27833375)
[»] chr6 (3 HSPs)
chr6 (81-166)||(27763436-27763521)
chr6 (27-65)||(10067283-10067321)
chr6 (6-70)||(4595766-4595830)
[»] chr7 (6 HSPs)
chr7 (83-164)||(46757449-46757530)
chr7 (11-71)||(29310443-29310503)
chr7 (83-166)||(46759202-46759285)
chr7 (11-65)||(41873463-41873517)
chr7 (83-164)||(27599236-27599317)
chr7 (11-59)||(32377291-32377339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (89-151)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (82-126)||(29938-29982)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 82 - 459
Target Start/End: Complemental strand, 14925366 - 14924984
Alignment:
Q  82 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatatt 181  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||        |||||||    
T  14925366 aagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt-ccatatt 14925268  T
Q  182 ggcccaccacttgcagctgccccaactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 275  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |      ||||||||||||||||||||||||||||||||||||||||||||||    
T  14925267 ggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatttggcgacgcttgcatgcttcaacaattccaggatgaatataagagg 14925168  T
Q  276 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14925167 aacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctc 14925068  T
Q  376 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14925067 tattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 14924984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 11469099 - 11469252
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga--nnnnnnn 173  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  11469099 aaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 11469198  T
Q  174 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 227  Q
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11469199 ttcatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 11469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 11469795 - 11469705
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  11469795 aaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacaccaga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 31787501 - 31787586
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  31787501 gaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactcaacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 31788301 - 31788216
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| |||||||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 14924692 - 14924782
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| ||||||||||||| |||||||||| | ||| || || ||||||||||| |||||||||||||||| |||||||||    
T  14924692 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 7464089 - 7464023
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 7464023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 11426882 - 11426948
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||| ||||||||||||| |||||||||| |||||||| ||||| |||||| | |||||||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagac 11426948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 11427526 - 11427460
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||||| |||||||||||||||||||||| ||| |||| |||||||||||| |  ||||||||||||    
T  11427526 gttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagac 11427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 7463444 - 7463510
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||| ||||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagac 7463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||| ||||||||||||| | |||||||| |||||||| ||||| |||||| | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 37890552 - 37890486
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||||| |||||||||||||||||||||| ||| |||| ||| |||||||| |  ||||||||||||    
T  37890552 gttttctaccatgggaaaactaattttgaccatcagattaacaagagaacacaactttatcatagac 37890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 2687748 - 2687680
Alignment:
Q  85 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||||| |||||||||||||| || ||||||   |||||| |||||  ||||||| |||||||||||||    
T  2687748 ttgtttcccaccatgggaaaattatttttgacagttagattaactaaggaacatagttttatcatagac 2687680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 43275852 - 43275804
Alignment:
Q  17 gtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 65  Q
    |||||||| |||||| ||| ||||||||||||||||| |||| ||||||    
T  43275852 gtgagacccacatgaatttcactcaataaaaaagtgagtgttggagaga 43275804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 77 - 459
Target Start/End: Complemental strand, 12888 - 12501
Alignment:
Q  77 aagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnncc 176  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||          ||    
T  12888 aagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccat-ttttttttcc 12790  T
Q  177 atattggcccaccacttgcagctgccccaactctctttcctttctctcctt------tctggcgacgcttgcatgcttcaacaattccaggatgaatata 270  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||    
T  12789 atattggcccaccacttgcagctgccccaactctcttttctttctctccttcccgaatctggtgacgcttgcatgcttcaacaattccaggatgaatata 12690  T
Q  271 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689 agaggaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattc 12590  T
Q  371 acctctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 459  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  12589 acctctattgtctcgcttgcagtattataaagtgactaccaagaatggtgaagatccatggtagattgagtggtgaatctttgttcctc 12501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 12202 - 12292
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| |||||||| ||||| ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  12202 aaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 104 - 452
Target Start/End: Original strand, 10420963 - 10421315
Alignment:
Q  104 aactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnccatattggcccaccacttgcagctgccc 203  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||        |||||||| ||||||||||||||||||||    
T  10420963 aactaattttgaccattagataaactagataacatacttttatcatagacactcaacaccagattttttt-ccatattgacccaccacttgcagctgccc 10421061  T
Q  204 caactctctttcctttctctcctttc------tggcgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 297  Q
    ||||||||||| |||||||||||| |      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421062 caactctcttttctttctctccttcccgaatttggtgacgcttgcatgcttcaacaattccaggatgaatataagaggaacagagtgatggcacatgctg 10421161  T
Q  298 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacctctattgtctcgtttgcagtatta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10421162 gaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacatcatca-ctgattcacctctattgtctcgtttgcagtatta 10421260  T
Q  398 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 taaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgt 10421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 6246802 - 6246955
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca--gannnnnnn 173  Q
    |||| ||| |||||| |||||||||||||  ||||||||| ||||||||||  |||||||||||||||||||||||||||| |||| ||               
T  6246802 aaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaacatcattttttttttt 6246901  T
Q  174 nccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 227  Q
     |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6246902 tccatattggcccaccacttgcagctgtcccaactctcttttctttctctcctt 6246955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 6247501 - 6247410
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatac-ttttatcatagacacttaacaccaga 166  Q
    |||| ||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  6247501 aaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacactcaacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 10421611 - 10421521
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  10421611 aaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 15481600 - 15481510
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| |||| ||||||||||||||||||| |  ||||| || ||||||||||| |||||||||||| ||| |||||||||    
T  15481600 aaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacaccaga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 15481058 - 15481141
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||| ||  ||||||||| |||||||||| | |||||| || ||||||||||| ||||||||||||| || |||||||    
T  15481058 gaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 50709719 - 50709765
Alignment:
Q  118 attagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  50709719 attagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 53664246 - 53664315
Alignment:
Q  92 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 161  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| ||||    
T  53664246 ccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 50710431 - 50710359
Alignment:
Q  92 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||||||   ||| |||| ||||||||||| ||||||||||   ||||||||||||||| |||||||    
T  50710431 ccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 2093924 - 2093865
Alignment:
Q  94 accatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||||||||||  || | ||||||||||||| || || ||||||||||||||||||||||    
T  2093924 accatgggaaagttattattgatcattagatcaaatatagaacatacttttatcatagac 2093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  112 ttgatcattagataaactagagaacatacttttatcatagaca 154  Q
    |||| ||||||||||| |||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 37306487 - 37306433
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 65  Q
    |||||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  37306487 aaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagaga 37306433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 53665080 - 53665028
Alignment:
Q  112 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 275 - 459
Target Start/End: Complemental strand, 45501022 - 45500838
Alignment:
Q  275 gaacagagtgatggcacatgctggaacttgatttttgagaatttgaccccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45501022 gaacagagtgatggcacatgctggaacttgatttttgagaatttgatcccacatctatgtctccacaacaaacacaaaaacaccatcacctgattcacct 45500923  T
Q  375 ctattgtctcgtttgcagtattataaagtgactaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgctcctc 459  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45500922 ctattatctcgtttgcagtattataaagtggctaccaagaatggtgaagatccatggcagattgagtggtgaatctgtgttcctc 45500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 52366603 - 52366677
Alignment:
Q  2 atttcataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttcataaa 76  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52366603 atttcatataaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttcataaa 52366677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 38337507 - 38337417
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  38337507 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 38336967 - 38337048
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||  ||||||| |||||||    
T  38336967 gaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  83 agttgttttccaccatgggaaaactaattttgatcattaga-taaactagagaacatacttttatcatagacacttaacac 162  Q
    |||||||||||||||||||||||  || ||||| ||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 15450256 - 15450318
Alignment:
Q  89 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 151  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  15450256 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 12350684 - 12350528
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga-----nnnn 170  Q
    |||| ||| |||||| ||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||             
T  12350684 aaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagattttttttt 12350585  T
Q  171 nnnnccatattggcccaccacttgcagctgccccaactctctttcctttctctcctt 227  Q
        |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  12350584 ttatccatattggcccaccacttgtagctgtcccaactctcttttctttctctcctt 12350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 12349985 - 12350075
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| ||||||||| |||||||||||| | ||||||||||| || ||||||| ||||||||||||||||| |||||||||    
T  12349985 aaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 43971301 - 43971386
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  43971301 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 39257657 - 39257737
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 161  Q
    |||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||||    
T  39257657 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 43972111 - 43972026
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 43924508 - 43924596
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| |||||||||| ||||||||||||| |||||||||| | |||||| || ||||||||||| |||||||||| ||||| |||||||    
T  43924508 aaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 43925048 - 43924958
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||| |||||||||| |||||||| ||||  ||||||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||    
T  43925048 aaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 38686333 - 38686409
Alignment:
Q  88 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||||||||||   ||| |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  38686333 ttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 38687049 - 38687000
Alignment:
Q  112 ttgatcattagataaactagagaacatacttttatcatagacacttaaca 161  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  38687049 ttgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  107 taattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    ||||||| | |||||||||||||| |||||||||||||| | |||||||| |||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 33802387 - 33802318
Alignment:
Q  92 ccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 161  Q
    |||||||||||||   ||| |||| ||||| ||||| ||||||||||  |||||||||||||||| ||||    
T  33802387 ccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 33801553 - 33801605
Alignment:
Q  112 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| ||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  33801553 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 4554684 - 4554764
Alignment:
Q  85 ttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccag 165  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4554684 ttgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 4555419 - 4555269
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccagannnnnnnnc 175  Q
    |||| |||||||||| | ||||||||||| |||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||||| |        |    
T  4555419 aaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca-attttttttc 4555321  T
Q  176 catattggcccaccacttgcagctgccccaactctctttcctttctctcctt 227  Q
    |||||||||||||| |||||||||| |||||||||||||  ||||| |||||    
T  4555320 catattggcccaccgcttgcagctgtcccaactctcttttatttctttcctt 4555269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 6805976 - 6805910
Alignment:
Q  87 gttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagac 153  Q
    |||| |||||||||||||||||||||| | ||| ||||  || | |||||||| |||||||||||||    
T  6805976 gtttcccaccatgggaaaactaattttaaccatcagatttacaaaagaacataattttatcatagac 6805910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 4993627 - 4993712
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4993627 gaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 4975719 - 4975804
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| ||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||| |||| ||||    
T  4975719 gaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 4976530 - 4976447
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 4994437 - 4994354
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||||| |||| ||||||||  ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 42369702 - 42369749
Alignment:
Q  117 cattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  42369702 cattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 8536167 - 8536240
Alignment:
Q  88 ttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaaca 161  Q
    |||||||||||||||||   ||| ||||  |||||||||| ||||||||||  |||||||||||||||| ||||    
T  8536167 ttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 8536880 - 8536828
Alignment:
Q  112 ttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  8536880 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 37545694 - 37545782
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| |||||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 41519955 - 41519867
Alignment:
Q  76 aaagtgaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||| |||||| ||| |||||||||||||  |  |||||| | ||| ||||| ||||||||||||||||| |||||||||  |||||||    
T  41519955 aaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 34142236 - 34142295
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 70  Q
    ||||| ||||||| ||||||| ||| |  ||||||||||||||||||| |||||||||||    
T  34142236 aaagtagtgagacatacatgaatttcatccaataaaaaagtgaatgtttgagagattgtt 34142295  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 42370974 - 42370900
Alignment:
Q  82 aagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacact 156  Q
    ||||||||| |||||||||||||   ||| |||  ||||||||||| | ||||| ||| ||||||||||||||||    
T  42370974 aagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacact 42370900  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 1271255 - 1271299
Alignment:
Q  82 aagttgttttccaccatgggaaaactaattttgatcattagataa 126  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  1271255 aagttgttttccactatgggaaaactaattttaaccgttagataa 1271299  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 27183833 - 27183781
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 63  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27183833 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27183781  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 27833375 - 27833323
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagaga 63  Q
    ||||||||||||||||||||||||| | |||| | || ||||| |||||||||    
T  27833375 aaagtggtgagacctacatgagtttcaatcaaaataagagtgagtgttagaga 27833323  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 27763436 - 27763521
Alignment:
Q  81 gaagttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||||| |||||| ||||||||||||||||| | |||||| || ||||||||||| |||||||| ||||||| |||||||||    
T  27763436 gaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacaccaga 27763521  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 10067321 - 10067283
Alignment:
Q  27 catgagttttactcaataaaaaagtgaatgttagagaga 65  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10067321 catgagttttattcaataaaaaagtgattgttagagaga 10067283  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 4595830 - 4595766
Alignment:
Q  6 cataaaaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgtt 70  Q
    |||||||||||||||||| |||||   ||| ||||||||||| ||||| || |||||||| ||||    
T  4595830 cataaaaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagagagtgtt 4595766  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  83 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    ||||||||||||||||| ||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 29310503 - 29310443
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagagattgttc 71  Q
    |||||||||||||| |||||||||| || |||||||||||||| ||||||| ||| |||||    
T  29310503 aaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaagagtgttc 29310443  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 46759285 - 46759202
Alignment:
Q  83 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacaccaga 166  Q
    |||||||| ||| ||| | ||| ||||| |||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||    
T  46759285 agttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccaga 46759202  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 41873517 - 41873463
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgttagagaga 65  Q
    |||||| ||||||  |||||||||| || |||||||||||||| |||||||||||    
T  41873517 aaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagaga 41873463  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 27599236 - 27599317
Alignment:
Q  83 agttgttttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatagacacttaacacca 164  Q
    |||||||| |||||||||||||  ||| ||||| |||||||| || ||  ||||| | | |||||||||||||| |||||||    
T  27599236 agttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 32377339 - 32377291
Alignment:
Q  11 aaagtggtgagacctacatgagttttactcaataaaaaagtgaatgtta 59  Q
    |||||||| |||||||||| | |||||  ||||||||||||||||||||    
T  32377339 aaagtggtaagacctacataaattttatccaataaaaaagtgaatgtta 32377291  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 11935 - 11873
Alignment:
Q  89 tttccaccatgggaaaactaattttgatcattagataaactagagaacatacttttatcatag 151  Q
    ||||||||||||||||  |||| |||| |||||||| || ||||||||||| |||||||||||    
T  11935 tttccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 29982 - 29938
Alignment:
Q  82 aagttgttttccaccatgggaaaactaattttgatcattagataa 126  Q
    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  29982 aagttgttttccactatgggaaaactaattttaaccgttagataa 29938  T

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