View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18226_high_6 (Length: 377)

Name: NF18226_high_6
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18226_high_6
NF18226_high_6
[»] chr7 (3 HSPs)
chr7 (10-105)||(33816945-33817041)
chr7 (168-229)||(33816818-33816879)
chr7 (295-359)||(33816684-33816752)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 33817041 - 33816945
Alignment:
Q  10 attattcttagtaaa-catcgcattctttgttgttgaccgaaccaactatttttctaaaaatgatgggttgcttataccttatcaatgcatcatttt 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817041 attattcttagtaaaacatcgcattctttgttgttgaccgaaccaactatttttctaaaaatgatgggttgcttataccttatcaatgcatcatttt 33816945  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 33816879 - 33816818
Alignment:
Q  168 gattgaacaacttgagtttcaaaagtacatgtttttgtactaggaacaagatataagaacaa 229  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  33816879 gattgaacaacttgactttcaaaagtgcatgtttttgtactaggaacaagatataagaacaa 33816818  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 33816752 - 33816684
Alignment:
Q  295 acttcttaaaaactatcacac----atagctacatatttattattttgaccgcatatatatgaaattac 359  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  33816752 acttcttaaaaactatcacacgtacatagctacatatttattattttgaccgcatatatatgaaattac 33816684  T

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