View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18226_high_7 (Length: 369)
Name: NF18226_high_7
Description: NF18226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18226_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 16965675 - 16965337
Alignment:
| Q |
18 |
catcaggccgtcggtgaatgtgaaagtgtggacgaggttgttttgtcgttattacagaaactcctggcctcccaatgcagtcttatggccatgatcctat |
117 |
Q |
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| T |
16965675 |
catcaggccgtcggtgaatgtgaaagtgtggacaaggttgttttgctgtcattacagaaattcctggcctcccaatgcagccttatagacatgatcctgt |
16965576 |
T |
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| Q |
118 |
ggagtctttcgaagcgtcgcaatttaaatctttagcaacaggttgatgagtcgacagcccaagggatagcacacgcaaatcaaatgccggaggactggca |
217 |
Q |
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| T |
16965575 |
ggagtctatcgaagcgtcgcaatttaaatctttagcaataggttgatgagtcgacagcccaagggatagcacgcgcaaatcaaatgttggaggactggaa |
16965476 |
T |
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| Q |
218 |
gttagcgcagcaccttcataataataatacgcagcttggcaccaatgtgagctcgggttcgcacattcataacgacttcaaatggcagcgtccatccacg |
317 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16965475 |
gttagcacagcaccttcataataataatacgcaacttggcaccaatgtgagctctggttcgcacattcataacgacttcaaatggcagcgtccatccacg |
16965376 |
T |
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| Q |
318 |
aaagtttaaatgtaacattgacccttccttttctcattc |
356 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
16965375 |
aaggtttaaatgtaacattgacccttccttttctcattc |
16965337 |
T |
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